PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022998480.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29394.7 Da    PI: 6.8626
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022998480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  XP_022998480.1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                    79***********************************************96 PP
2K-box67.83.5e-239217715100
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ ++e+++L++ei +Lq +q +llG+dL+ L +keLq+LeqqL+++l  +++kK++ll+eq+e+++ +e+++  en++Lr+++ e
  XP_022998480.1  92 KQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSE 177
                     56689*****************************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKHTLSRYN RCIESSETPI DGHKAEYLHL QKQEHEEVDN LRDEITTLQM KQLQLLGKDL  120
TGLGFKELQN LEQQLNEGLL LVKEKKEQLL MEQLEQSRVQ EQRAMLENET LRRQVSELRC  180
LFPPVDCPLP AYLEYCSLEK KKVGIRIPDV ICNSEIERGD SDTTLHLGLP SHVYCKRKEA  240
ERDTHSNDSR SQMGLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-67MIKC_MADS family protein