PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022996496.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1069aa MW: 117606 Da PI: 6.4326

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022996496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.8	4.3e-23	131	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022996496.1 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 222 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_022996496.1 223 QQLLLGIRRA 232 889**997 PP
2	Auxin_resp	118.5	5.6e-39	257	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW++S+Wr+L+ XP_022996496.1 257 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQ 340 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1069 aa Download sequence
MKTPANGAAA VPNSSEGGLE KKIINPELWQ ACAGPLANLP PAGYHVVYFP QGHSEQVAAS 60 LKKDVDGQVP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLLPVPSFD KDALLRSDLA 120 LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVAKDLHDNV 180 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD EKQQLLLGIR RANRQPTNLS 240 SSVLSTDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VSANQISLGM 300 RFRMMFETEE SGTRRYMGTI TGISDLDSVR WKGSQWRNLQ VGWDESTGGE RRNRVSIWEI 360 EPVIAPFFIC PPPFLRSKRP RQPGMPDDDS SDLDGICKRT MFGDDFCMKD PQGYPGLNLV 420 QWMNMQNPSL SNAMQPSYMH SFSGSMLPNL GGVDISRQLG LSNTQIPQSN NIQFNAQRLL 480 SQAQQLDQLP KLPSSMNSLG SVVQPSQQLD DMSQQTRPNL INQNAVSSQI QAQIMQQQQP 540 HTNGIVLQQN QQLQRSLPQN QPQTMNQSSL PEPMIHHLQM SDNQVPMQML QKLQQQQQQS 600 LLAQQSVVLQ PSQLPEQLRQ SVDASFSRSM SSNQMLDIPQ STPAAVPPSN VSPQQAAKSN 660 GTTNNRFSNQ HLQPKLPQLH QPPPSTVLSD MSRPVGLPPT QTYNQLSAAT SSVITGAAAA 720 GQSGITDDIP SCSTSPSTNN GPSLIQPVNN GRVHRSTGLV EDVAQSSATI FSTNTLTAVK 780 PSLNISKNQS HAIFAQQTFL SGVVSQTDFL DTSSSTTSAC LSQNEAQLQQ NNVMSFNSQP 840 MLFRDSTQDL EVPTDLHNIP YGTNVDGPLV TQLNSDPLLN KGIGELGKDF SNNFSSGAML 900 TTYDAQKDPQ QEISSSIVSQ SFGIPDMTFN SMDSAMNDNA FLNRNQWAPP PPFQRMRTYT 960 KVYKRGAVGR SIDITSYTGY DELKQDLARR FGIEGQLEDR QKIGWKLVYV DHENDVLLVG 1020 DDPWEDFVNC VRSIKILSPQ EVQQMSLDGD FGNGVLLNQA CSSSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1069 aa Download sequence

MKTPANGAAA VPNSSEGGLE KKIINPELWQ ACAGPLANLP PAGYHVVYFP QGHSEQVAAS  60
LKKDVDGQVP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLLPVPSFD KDALLRSDLA  120
LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVAKDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD EKQQLLLGIR RANRQPTNLS  240
SSVLSTDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VSANQISLGM  300
RFRMMFETEE SGTRRYMGTI TGISDLDSVR WKGSQWRNLQ VGWDESTGGE RRNRVSIWEI  360
EPVIAPFFIC PPPFLRSKRP RQPGMPDDDS SDLDGICKRT MFGDDFCMKD PQGYPGLNLV  420
QWMNMQNPSL SNAMQPSYMH SFSGSMLPNL GGVDISRQLG LSNTQIPQSN NIQFNAQRLL  480
SQAQQLDQLP KLPSSMNSLG SVVQPSQQLD DMSQQTRPNL INQNAVSSQI QAQIMQQQQP  540
HTNGIVLQQN QQLQRSLPQN QPQTMNQSSL PEPMIHHLQM SDNQVPMQML QKLQQQQQQS  600
LLAQQSVVLQ PSQLPEQLRQ SVDASFSRSM SSNQMLDIPQ STPAAVPPSN VSPQQAAKSN  660
GTTNNRFSNQ HLQPKLPQLH QPPPSTVLSD MSRPVGLPPT QTYNQLSAAT SSVITGAAAA  720
GQSGITDDIP SCSTSPSTNN GPSLIQPVNN GRVHRSTGLV EDVAQSSATI FSTNTLTAVK  780
PSLNISKNQS HAIFAQQTFL SGVVSQTDFL DTSSSTTSAC LSQNEAQLQQ NNVMSFNSQP  840
MLFRDSTQDL EVPTDLHNIP YGTNVDGPLV TQLNSDPLLN KGIGELGKDF SNNFSSGAML  900
TTYDAQKDPQ QEISSSIVSQ SFGIPDMTFN SMDSAMNDNA FLNRNQWAPP PPFQRMRTYT  960
KVYKRGAVGR SIDITSYTGY DELKQDLARR FGIEGQLEDR QKIGWKLVYV DHENDVLLVG  1020
DDPWEDFVNC VRSIKILSPQ EVQQMSLDGD FGNGVLLNQA CSSSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein