PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022993745.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 842aa    MW: 93800.3 Da    PI: 6.4182
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022993745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.3e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022993745.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022993745.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp119.52.6e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_022993745.1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79********************************86599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MKLSTSGFGQ QDHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNK  60
EVDGHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTAQEQKD TFLPMELGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LTKYVKAVFH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESAAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHP GVSSVHDNRD DASNGLMWLR GGVGDQGLHS LNLQSMGSLP  420
LLQQRLDSPM FGNDHNQQYQ AMLAAGMPNL GGVDRLRQQI MHLQQPFQYI QQAGFHNSLL  480
QQQQQLVQQS MPQNILQTPS QVMAENIPQH ILQQTPQNQP EDIPNQQQRT YHDTLQVQSN  540
QFHQGENSNV PSPPFPRTEL TDSNTNYSES MISRRNILAS SCAEGTGNFS NIYRSGQSIL  600
TEQLPQQSPV SKNAHPQVDA HSNSMTFPPP FSGRDSILEL GNCNSDSPSR TLFGVNIDSS  660
GLLLPSNVPT YASPSIGPDS SSMPMGDSGF QNSMYRCVQD SSELLHSSGQ GDPLNPTRTF  720
VKVYKSGSVG RSLDISRFSS YQELREELAQ MFGIEGQLVD PHRSGWQLVF VDRENDVLLL  780
GDDPWEAFVN NVWYIKILSP QDFQKLGVQA IESFNPVGQR LTSGGNEAEN VSGLPSVGSL  840
EY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein