PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022987153.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1751aa MW: 194342 Da PI: 6.6389

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022987153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.5e-23	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_022987153.1 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 240 99***************************7333.34459********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_022987153.1 241 GELRVGVRRA 250 99***996 PP
2	Auxin_resp	119.2	3.3e-39	275	357	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++++GmRfkm+fe+e+++e+r++Gt++g +d+dp rW++SkWr+Lk XP_022987153.1 275 AWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLK 357 89*******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1751 aa Download sequence
MASSEVSINP NSASVPFNDH ADSTKLTSDP PNALSARDAD FALFTELWNA CAGPLVSVPR 60 ENDRVFYFPQ GHIEQVEAST SQVADQQMPV YDLPSKILCR VINVHLKAEP DTDEVFAQIT 120 LVPEANQDEH AVDKEPPPPP PRRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM 180 SRQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN 240 GELRVGVRRA MRQHGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK PRTSPSEFIV 300 PYDQYMESIK KSYTIGMRFK MRFEGEEAPE QRFTGTIIGC EDADPKRWKD SKWRCLKVRW 360 DETSTISRPE KVSPWKIEPA LAPPALNPLP MTRPKRPRSN MVPTSPDSSV LTREGSSRVT 420 VDPSPVSAFT RVLQGQEFST LRGNFIDGND PDAAEKSVMW PPSLDDEKID VVSTSKKHGA 480 DCWITPGRSE PTYADLLSGF GTNIDSSHGV RAGMGDPAVV TANSIRKHVM DQDGKFNFLG 540 GSSWSVLPSG LSLNLVDSSQ KGHIQAGDLS YQVRGNASFN GFGDHSVAHC HRTEQPHGNW 600 LMAPLPSHFD YPVQSTELMS MPMVFQNQDI MKPKDGNCKL FGISLIKNPA IPDPAGLNRN 660 MNGADVTHLN IHQIHSNESD LKSEPSRGSM LADKSLAIND ADKLQQTCTQ NLKDAHCKSQ 720 GTSARSCTKV QKQGIALGRS VDLSRFNNYD ELVAELDQLF EFGGELLAPK KNWLIVYTDD 780 EGDMMLVGDD PWQEFCGMVR KIFIYTREEV QKMNRGSLNL KGDEKSVDIM AGVLVQSTDI 840 PGLIGGRKNG LSGGTGDAKR PVKMMACVHA PGLRIRSFSG LRGFNSLDNM LRNGQDFHSR 900 VAITISSRRR KASRCVPKAM FERFTEKAIK VIMLAQEEAR RLGHNFVGTE QILLGLIGEG 960 TGIAAKVLKS MGINLKDARV EVEKIIGRGS GFVAVEIPFT PRAKRVLELS LEEARQLGHN 1020 YIGSEHLLLG LLREGEGVAA RVLENLGADP SNIRTQVIRM VGESTEAVGA GVGGGSSGNK 1080 MPTLEEYGTN LTKLAEEGKL DPVVGRQQQI ERVTQILGRR TKNNPCLIGE PGVGKTAIAE 1140 GLAQRIANGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QSDEIILFID 1200 EVHTLIGAGA AEGAIDAANI LKPALARGEL QCIGATTLDE YRKHIEKDPA LERRFQPVKV 1260 PEPSVDETIQ ILKGLRERYE IHHKLRYTDE ALVAAAQLSY QYISDRFLPD KAIDLVDEAG 1320 SRVRLRHAQL PEEARELEKE LRQITKEKNE AVRSQDFEKA GELRDREMEL KTKISALVDK 1380 GKEMSKAESE AGDVGPVVTE VDIQHIVSSW TGIPVEKVST DESDRLLKME ETLHKRVIGQ 1440 DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKALAAYYF GSEEAMIRLD 1500 MSEFMERHTV SKLIGSPPGY VGYTEGGQLT EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI 1560 LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRRIG FDLDYDEKDS NYNRIKSLVT 1620 EELKQYFRPE FLNRLDEMIV FRQLTKLEVK EIADIMLKEV FDRLKTKEID LQVTERFRDR 1680 VVEEGYNPSY GARPLRRAIM RLLEDSMAEK MLAREIKEGD SVIVDVDSDG NVTVLNGSSG 1740 APESLPDAIP V

Sequence ? help Back to Top

Protein Sequence Length: 1751 aa Download sequence

MASSEVSINP NSASVPFNDH ADSTKLTSDP PNALSARDAD FALFTELWNA CAGPLVSVPR  60
ENDRVFYFPQ GHIEQVEAST SQVADQQMPV YDLPSKILCR VINVHLKAEP DTDEVFAQIT  120
LVPEANQDEH AVDKEPPPPP PRRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM  180
SRQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN  240
GELRVGVRRA MRQHGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK PRTSPSEFIV  300
PYDQYMESIK KSYTIGMRFK MRFEGEEAPE QRFTGTIIGC EDADPKRWKD SKWRCLKVRW  360
DETSTISRPE KVSPWKIEPA LAPPALNPLP MTRPKRPRSN MVPTSPDSSV LTREGSSRVT  420
VDPSPVSAFT RVLQGQEFST LRGNFIDGND PDAAEKSVMW PPSLDDEKID VVSTSKKHGA  480
DCWITPGRSE PTYADLLSGF GTNIDSSHGV RAGMGDPAVV TANSIRKHVM DQDGKFNFLG  540
GSSWSVLPSG LSLNLVDSSQ KGHIQAGDLS YQVRGNASFN GFGDHSVAHC HRTEQPHGNW  600
LMAPLPSHFD YPVQSTELMS MPMVFQNQDI MKPKDGNCKL FGISLIKNPA IPDPAGLNRN  660
MNGADVTHLN IHQIHSNESD LKSEPSRGSM LADKSLAIND ADKLQQTCTQ NLKDAHCKSQ  720
GTSARSCTKV QKQGIALGRS VDLSRFNNYD ELVAELDQLF EFGGELLAPK KNWLIVYTDD  780
EGDMMLVGDD PWQEFCGMVR KIFIYTREEV QKMNRGSLNL KGDEKSVDIM AGVLVQSTDI  840
PGLIGGRKNG LSGGTGDAKR PVKMMACVHA PGLRIRSFSG LRGFNSLDNM LRNGQDFHSR  900
VAITISSRRR KASRCVPKAM FERFTEKAIK VIMLAQEEAR RLGHNFVGTE QILLGLIGEG  960
TGIAAKVLKS MGINLKDARV EVEKIIGRGS GFVAVEIPFT PRAKRVLELS LEEARQLGHN  1020
YIGSEHLLLG LLREGEGVAA RVLENLGADP SNIRTQVIRM VGESTEAVGA GVGGGSSGNK  1080
MPTLEEYGTN LTKLAEEGKL DPVVGRQQQI ERVTQILGRR TKNNPCLIGE PGVGKTAIAE  1140
GLAQRIANGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QSDEIILFID  1200
EVHTLIGAGA AEGAIDAANI LKPALARGEL QCIGATTLDE YRKHIEKDPA LERRFQPVKV  1260
PEPSVDETIQ ILKGLRERYE IHHKLRYTDE ALVAAAQLSY QYISDRFLPD KAIDLVDEAG  1320
SRVRLRHAQL PEEARELEKE LRQITKEKNE AVRSQDFEKA GELRDREMEL KTKISALVDK  1380
GKEMSKAESE AGDVGPVVTE VDIQHIVSSW TGIPVEKVST DESDRLLKME ETLHKRVIGQ  1440
DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKALAAYYF GSEEAMIRLD  1500
MSEFMERHTV SKLIGSPPGY VGYTEGGQLT EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI  1560
LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRRIG FDLDYDEKDS NYNRIKSLVT  1620
EELKQYFRPE FLNRLDEMIV FRQLTKLEVK EIADIMLKEV FDRLKTKEID LQVTERFRDR  1680
VVEEGYNPSY GARPLRRAIM RLLEDSMAEK MLAREIKEGD SVIVDVDSDG NVTVLNGSSG  1740
APESLPDAIP V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.4	0.0	ARF family protein