PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022985777.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 779aa MW: 86353.9 Da PI: 6.9161

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022985777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.6e-23	170	271	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_022985777.1 170 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFL--RGE 260 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_022985777.1 261 NGELRLGIRRA 271 9999**996 PP
2	Auxin_resp	118.3	6.1e-39	296	377	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++Fvv+++k++k+++++v vG+Rfkm+fe++ds+err+ G+vvg+ d+dp+rW nSkWr+L XP_022985777.1 296 VVKAVSTKSTFDVFYNPRAHHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWLNSKWRCL 377 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence
MEIDLNQTAS EVGKNAYCHG NCEEGRCNCC LSSSTSSCSS NSSSTPASSS TYLELWHACA 60 GPLTSLPKKG NAVVYFPQGH LEQIASASPF SPMDMATFDL QPQILCKVIN VHLLANKEND 120 EVYTQLTLLP LPELLGTGVE GKELEELALN RDADGDGSGG SPTRSTPHMF CKTLTASDTS 180 THGGFSVPRR AAEDCFPPLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS 240 IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLTRVVKAV 300 STKSTFDVFY NPRAHHAQFV VSCQKYVKSI NNPVNVGTRF KMRFEMDDSP ERRFNGVVVG 360 IGDMDPFRWL NSKWRCLTVR WDKDSDHQER VSPWEIDPSV SLPPLSVQSS PRLKKLRTSL 420 QAAPPNNAFN GRGGFMDFED SVRSSKVLQG QENVGMVSPF YGCDTAKRSL EFEVRSSAQQ 480 NQASGGVEKL NIGDYVTSFT GFMESDRFLK VLQGQEICSL RPQTRKPEPS LGVWGKFNLS 540 DNSFNPFQSP NSSFYHMASN GARNMYYPRR DIYSTGQAAM MSSNDINFPR ESALLNPSAK 600 MERANSTPPT LGSNMRNSKD ENVNQNRTGC KLFGFSLTTE TATNMQSSGK RSCTKVHKQG 660 SLVGRAIDLS RLNGYTDLLS ELERLFSMEG LLKDPDKGWR VLYTDNENDV MVVGDYPWHD 720 FCDAVSKIHI YTEEEVEKMT NGVISDDTQS CLDQAALCME ASKSSSVGQP DSSPTVVRV

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence

MEIDLNQTAS EVGKNAYCHG NCEEGRCNCC LSSSTSSCSS NSSSTPASSS TYLELWHACA  60
GPLTSLPKKG NAVVYFPQGH LEQIASASPF SPMDMATFDL QPQILCKVIN VHLLANKEND  120
EVYTQLTLLP LPELLGTGVE GKELEELALN RDADGDGSGG SPTRSTPHMF CKTLTASDTS  180
THGGFSVPRR AAEDCFPPLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS  240
IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLTRVVKAV  300
STKSTFDVFY NPRAHHAQFV VSCQKYVKSI NNPVNVGTRF KMRFEMDDSP ERRFNGVVVG  360
IGDMDPFRWL NSKWRCLTVR WDKDSDHQER VSPWEIDPSV SLPPLSVQSS PRLKKLRTSL  420
QAAPPNNAFN GRGGFMDFED SVRSSKVLQG QENVGMVSPF YGCDTAKRSL EFEVRSSAQQ  480
NQASGGVEKL NIGDYVTSFT GFMESDRFLK VLQGQEICSL RPQTRKPEPS LGVWGKFNLS  540
DNSFNPFQSP NSSFYHMASN GARNMYYPRR DIYSTGQAAM MSSNDINFPR ESALLNPSAK  600
MERANSTPPT LGSNMRNSKD ENVNQNRTGC KLFGFSLTTE TATNMQSSGK RSCTKVHKQG  660
SLVGRAIDLS RLNGYTDLLS ELERLFSMEG LLKDPDKGWR VLYTDNENDV MVVGDYPWHD  720
FCDAVSKIHI YTEEEVEKMT NGVISDDTQS CLDQAALCME ASKSSSVGQP DSSPTVVRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein