PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022985378.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 692aa MW: 77356.2 Da PI: 7.3138

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022985378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.6	2.7e-24	122	222	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_022985378.1 122 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 212 99**************************9643..445569********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_022985378.1 213 NGELRVGVRR 222 999***98 PP
2	Auxin_resp	102.2	6.8e-34	248	326	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+st + F v+Y+Pra s+F+v+++k+ +a+++k+ vGmRfkm+fe+e+s+err+sGt+vgv d++p +WpnSkW+sL XP_022985378.1 248 ASHAVSTLTRFVVYYKPRA--SQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISP-HWPNSKWQSL 326 689*************8..9******************************************999.******99 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MANRGGGSSQ GGGGDGLYTE LWKASAGPLV EVPRVNDKVF YFPQGHMEQL EASPNHELNQ 60 KQPLFKLSSK ILCRVVDVRL LAEQETDEVY AQITLMPDSN QEEPTNPDPS PPECRKPKVH 120 SFCKVLTASD TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAKDLHGY EWRFKHIFRG 180 QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GENGELRVGV RRLARQQTSM PSSVISSDSM 240 HLGVLATASH AVSTLTRFVV YYKPRASQFI VSLNKYIEAM NRKFLVGMRF KMRFEGEESP 300 ERRFSGTIVG VDDISPHWPN SKWQSLRIQW DELASIPRPD RVSPWEIEPF VAPTSPSIPQ 360 SVSVKNKRLR PPLDIPDSDN STVTTLRHPG STQSHDDRAQ LSIAASEMKR FENHATWNYK 420 QTDVSSIGNS VSRTPKEGSW LASPNGSVSQ HRLQNLTDDR NSSYVWSTVF SGAPVAQSTC 480 RAPHPSNPKS SDQVNDLGEK GRKTEVAPSC RLFGIDIIGH SKSPVPPEMA ADQPISAPNE 540 ITDAEQNSDQ PKASKERKLG LLQVPPKEIQ HKQSSSTNSR SRTKVQMQGM AVGRAVDLTM 600 LEGYGQLIDE LEKMFDIKGE LHPRDKWEIV FTDDEGDTML MGDYPWQEFC NMVRRIYIWS 660 SQDVKMMNSV SKLTMSAMEC DGTVITSESA DS

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MANRGGGSSQ GGGGDGLYTE LWKASAGPLV EVPRVNDKVF YFPQGHMEQL EASPNHELNQ  60
KQPLFKLSSK ILCRVVDVRL LAEQETDEVY AQITLMPDSN QEEPTNPDPS PPECRKPKVH  120
SFCKVLTASD TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAKDLHGY EWRFKHIFRG  180
QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GENGELRVGV RRLARQQTSM PSSVISSDSM  240
HLGVLATASH AVSTLTRFVV YYKPRASQFI VSLNKYIEAM NRKFLVGMRF KMRFEGEESP  300
ERRFSGTIVG VDDISPHWPN SKWQSLRIQW DELASIPRPD RVSPWEIEPF VAPTSPSIPQ  360
SVSVKNKRLR PPLDIPDSDN STVTTLRHPG STQSHDDRAQ LSIAASEMKR FENHATWNYK  420
QTDVSSIGNS VSRTPKEGSW LASPNGSVSQ HRLQNLTDDR NSSYVWSTVF SGAPVAQSTC  480
RAPHPSNPKS SDQVNDLGEK GRKTEVAPSC RLFGIDIIGH SKSPVPPEMA ADQPISAPNE  540
ITDAEQNSDQ PKASKERKLG LLQVPPKEIQ HKQSSSTNSR SRTKVQMQGM AVGRAVDLTM  600
LEGYGQLIDE LEKMFDIKGE LHPRDKWEIV FTDDEGDTML MGDYPWQEFC NMVRRIYIWS  660
SQDVKMMNSV SKLTMSAMEC DGTVITSESA DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein