PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022980046.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 491aa MW: 54658.4 Da PI: 6.1475

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022980046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	4.9e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_022980046.1 12 VPCDFCNEQVAILYCRADSAKLCLFCDKHVHSAnllsrkH 51 67***************************99545555556 PP
2	zf-B_box	24.2	7.2e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++++++ C +++ lC++C H + H+++p+ XP_022980046.1 54 SQICDNCRSEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHERTPI 99 689************************99955999999998876 PP
3	CCT	61.8	2.2e-21	443	487	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk++e XP_022980046.1 443 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKASE 487 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MVCSKSTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC 60 RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHERTPIE GFTGCPSALE LVSLWGFDLG 120 EKKMEESEML VQNWVGSQDL VMPIDHWACR ASATAFNDLV VPKDNPYLFA NLNCTDSASM 180 LKRQNPSCGK HKQVLYKQLV ELLKRDFEGG DDVVDETRDG DAGGEEVGLQ NLVPETTNGV 240 CYWQEDLEAR QIHKEDNGVF VDAAAPPQPL LQQQTSFTSL LTMPPHVGLK YSERIGDETN 300 VCDGNPTRQG IQIWDFNLGR LRGHKDSSSF EEAYGTGNMG FTIKNFDEFL KETSPTSPKL 360 LGETYQINCS GTHDDIPSFN GNINNTTLSQ GAATCESGNP SKSKLKCGYK NAQPIEKPII 420 VNVDSILSTS TTKADLELLA QNRGNAMQRY KEKRKTRRYD KYIRYESRKA RADTRKRVKG 480 RFVKASEAPV F

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MVCSKSTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC  60
RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHERTPIE GFTGCPSALE LVSLWGFDLG  120
EKKMEESEML VQNWVGSQDL VMPIDHWACR ASATAFNDLV VPKDNPYLFA NLNCTDSASM  180
LKRQNPSCGK HKQVLYKQLV ELLKRDFEGG DDVVDETRDG DAGGEEVGLQ NLVPETTNGV  240
CYWQEDLEAR QIHKEDNGVF VDAAAPPQPL LQQQTSFTSL LTMPPHVGLK YSERIGDETN  300
VCDGNPTRQG IQIWDFNLGR LRGHKDSSSF EEAYGTGNMG FTIKNFDEFL KETSPTSPKL  360
LGETYQINCS GTHDDIPSFN GNINNTTLSQ GAATCESGNP SKSKLKCGYK NAQPIEKPII  420
VNVDSILSTS TTKADLELLA QNRGNAMQRY KEKRKTRRYD KYIRYESRKA RADTRKRVKG  480
RFVKASEAPV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-101	CO-like family protein