PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022979285.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 699aa    MW: 78177.8 Da    PI: 7.2531
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022979285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-24129229198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_022979285.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 219
                     99****************************9643..445569************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_022979285.1 220 NGELRVGVRR 229
                     999*****98 PP
2Auxin_resp101.41.1e-33255333182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+haa+t + F v+Y+Pra  s+F v+++k+++a+++k+ vGmRfkm+fe+eds+err+sGt++gv d++p  WpnS+WrsL
  XP_022979285.1 255 ASHAAATLTRFVVYYKPRA--SQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISP-YWPNSQWRSL 333
                     689***************8..9************************************************9.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    
MANRVGGSFS PSNVSSQGSG RDGLYVELWK ASAGPLVEVP RVHEHVFYFP QGHMEQLEAS  60
TNQELNQKLP SFNLPSKILC HVVDVRLLAE QETDEVYAQI SLIPEGNQEE PTTPGPSPGE  120
CRKSKVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELI AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRL SRQQTTMPSS  240
VISSHSMHLG VLATASHAAA TLTRFVVYYK PRASQFLVSL SKYKEAMNTK FLVGMRFKMR  300
FEGEDSPERR FSGTIIGVDD ISPYWPNSQW RSLRVQWDEL ASIQRPERVS LWEIEPFVAP  360
VSQSIPQSIS VKNKRPRPPL DIPDSDNSTV TTLRHPVSTQ SHDDKTQLSV PAGWHYKQTD  420
ISSNGNSVSR THNDGSWLTV PNGSVSQHRL KDSTEDHKSN SVWSAVFPGV PTAHSTCPTP  480
RTSNPMSDQI NEFGEEGRKT EVAPSCRLFG IELIDHSKRP VPPETTADQS NSAPNEVTES  540
HINTLLSSNA EQQGSNLPKA SSKERKLGLL QALPKEIQHK QNASTNCRSR TKVQMQGMAV  600
GRAVDLTTLV GYDQLIDEME KMFDVKGELR PRDKWEIVFT DDEGDTMLMG DYPWQEFCNM  660
VRRIYIWSSQ DVKTSSGRRL TMSAIEFDGT AITSESADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein