PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022979154.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 854aa MW: 94755.1 Da PI: 7.4979

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022979154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.8e-06	233	253	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f + G C++G++C+F+H+ XP_022979154.1 233 YCTDFVK-GRCHRGASCTFSHD 253 59***.***********6 PP
2	zf-CCCH	21.5	4.1e-07	294	315	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022979154.1 294 VICKYFAA-GSCRNGKNCKYSHH 315 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence
MSGSGRKHSS KWDLREDSHF EADSVQDHSW PGKESRPGWI SAEIASDDGS KWSGMATTNT 60 VSKPTQDWGL LSEEEPLPGT RASLKEDRPN KGYNKNMDGT AECDAEESYD MRMSPDLDGR 120 RSHGSNLPDR NDWIGSVRGR SRSRSWSRSP PHGNKRDSGF HDRNTNRTRV STQLCRDFTS 180 GRCRRGSGCQ FLHQDDQNLD DSLENRNRKG ARSFRSTSHD FKDYPRSGRS AAYCTDFVKG 240 RCHRGASCTF SHDSAFHELS RDSPNDISRD RKNERTKEAY FSRGEREPCS SSLVICKYFA 300 AGSCRNGKNC KYSHHSQSRA SPERKSSTDK LEHVQCSDGR EQLWDGLKSS ELASGSDFTQ 360 LIEDKKEQTA NEEPRYTWPS DQKCDHGLNN ESKTRWDRAV DIKTVRSNKN DAIPSKAENA 420 GGCTGSSDPR GHRKWPSDDM EMSPDWHYPV QPSNHVVKGD CNVMQDSGSQ TSTALAISHA 480 TVQEGLAKNQ DIAIEPIVVD ITRFRKSHTL TKDDTIASAS NDNITIDRTV TSHAEGNPSG 540 NVVLGQRMAY HSDHPDGTVT NPKISDGNFR VKLQKEDESM PGINSGTTVT PNIVTNDQIR 600 QITDLSASLA QYFGNAQPLP QLYASLNTRS VSEAPSFPYS DAPMGALGTS MKTGPVNESS 660 KQHDSALCNS LQLKKLEVTK TPQKSTTEVK GEVQIPNLPL SSGPCGISAE ETLHGKPTAD 720 GDAIKEKNGD GNNENKTDPA TNEDSQKIDT TENANGNDEV HDKKKSKDMK GIRAFKFALV 780 EFVKELLKPT WKEGHISKDV YKTIVKKVVD KVTGSLQDGH IPQTQEKIDH YLSFSKSKLT 840 KLVQAYVDRV QKTT

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence

MSGSGRKHSS KWDLREDSHF EADSVQDHSW PGKESRPGWI SAEIASDDGS KWSGMATTNT  60
VSKPTQDWGL LSEEEPLPGT RASLKEDRPN KGYNKNMDGT AECDAEESYD MRMSPDLDGR  120
RSHGSNLPDR NDWIGSVRGR SRSRSWSRSP PHGNKRDSGF HDRNTNRTRV STQLCRDFTS  180
GRCRRGSGCQ FLHQDDQNLD DSLENRNRKG ARSFRSTSHD FKDYPRSGRS AAYCTDFVKG  240
RCHRGASCTF SHDSAFHELS RDSPNDISRD RKNERTKEAY FSRGEREPCS SSLVICKYFA  300
AGSCRNGKNC KYSHHSQSRA SPERKSSTDK LEHVQCSDGR EQLWDGLKSS ELASGSDFTQ  360
LIEDKKEQTA NEEPRYTWPS DQKCDHGLNN ESKTRWDRAV DIKTVRSNKN DAIPSKAENA  420
GGCTGSSDPR GHRKWPSDDM EMSPDWHYPV QPSNHVVKGD CNVMQDSGSQ TSTALAISHA  480
TVQEGLAKNQ DIAIEPIVVD ITRFRKSHTL TKDDTIASAS NDNITIDRTV TSHAEGNPSG  540
NVVLGQRMAY HSDHPDGTVT NPKISDGNFR VKLQKEDESM PGINSGTTVT PNIVTNDQIR  600
QITDLSASLA QYFGNAQPLP QLYASLNTRS VSEAPSFPYS DAPMGALGTS MKTGPVNESS  660
KQHDSALCNS LQLKKLEVTK TPQKSTTEVK GEVQIPNLPL SSGPCGISAE ETLHGKPTAD  720
GDAIKEKNGD GNNENKTDPA TNEDSQKIDT TENANGNDEV HDKKKSKDMK GIRAFKFALV  780
EFVKELLKPT WKEGHISKDV YKTIVKKVVD KVTGSLQDGH IPQTQEKIDH YLSFSKSKLT  840
KLVQAYVDRV QKTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-11	C3H family protein