PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022973550.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 345aa MW: 39281.3 Da PI: 7.4348

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022973550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.9	2.4e-09	16	57	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC++C ++ H+ H+ XP_022973550.1 16 ARACDSCFRKRARWYCAADDAFLCQSCDSAVHSAnplarrHQ 57 578*****************************6567777776 PP
2	CCT	68.7	1.5e-23	289	332	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_022973550.1 289 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 332 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSTKSSIANA VGGRTARACD SCFRKRARWY CAADDAFLCQ SCDSAVHSAN PLARRHQRLR 60 LNSPTSSNSK PPSPSWVSGF TRKPRTPRPP PRPKSDDLLS NPSFSLVPEA DDATSHEDNE 120 EDHLLYRVPT FDPFLPSHDL DLADFASDLE RQCFDMEGLG LVKVEDLHEQ QEADYCRAQH 180 QFEAQMDVMR EPFELIPVVD VKNERQEDCA EETEDESKTQ MKRRVTLLLD CEAVIAAWGD 240 DKSPWTTGER PDLDPDQPWP HFMALCGGRN GQGCGEYGMG TAAMGDGRRE ARVLRYREKR 300 RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTALTHPVLP IMSIK

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSTKSSIANA VGGRTARACD SCFRKRARWY CAADDAFLCQ SCDSAVHSAN PLARRHQRLR  60
LNSPTSSNSK PPSPSWVSGF TRKPRTPRPP PRPKSDDLLS NPSFSLVPEA DDATSHEDNE  120
EDHLLYRVPT FDPFLPSHDL DLADFASDLE RQCFDMEGLG LVKVEDLHEQ QEADYCRAQH  180
QFEAQMDVMR EPFELIPVVD VKNERQEDCA EETEDESKTQ MKRRVTLLLD CEAVIAAWGD  240
DKSPWTTGER PDLDPDQPWP HFMALCGGRN GQGCGEYGMG TAAMGDGRRE ARVLRYREKR  300
RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTALTHPVLP IMSIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	316	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	4e-67	CO-like family protein