PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971743.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 347aa MW: 38523.8 Da PI: 7.5519

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.5	4.9e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l XP_022971743.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_022971743.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQSDL YNAKKELASY VGPQAMIPIL 120 QPSTAIMTSN PQGPVTSPSS SVLLPYNMSP MFGIPSSGGG GSSQQMLIRE SPHQQQQHHH 180 QIQQQQQLFE AQQLAAAVAA REQQEMFRAY EQKQTQQHQQ QQHSPSQRQH ELLRFNGFDP 240 AGVGAGAGTG AGGFNNQMNS PSDLTLGTFP DNSYQIQTQP EHSHSHSHSH SHHHHPLQVQ 300 LFPQPQQTQL DQSQQQQQQP HPHRSQQIHK PEATADDGRN INIGPSC

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNASQR  60
EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQSDL YNAKKELASY VGPQAMIPIL  120
QPSTAIMTSN PQGPVTSPSS SVLLPYNMSP MFGIPSSGGG GSSQQMLIRE SPHQQQQHHH  180
QIQQQQQLFE AQQLAAAVAA REQQEMFRAY EQKQTQQHQQ QQHSPSQRQH ELLRFNGFDP  240
AGVGAGAGTG AGGFNNQMNS PSDLTLGTFP DNSYQIQTQP EHSHSHSHSH SHHHHPLQVQ  300
LFPQPQQTQL DQSQQQQQQP HPHRSQQIHK PEATADDGRN INIGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-75	LBD family protein