PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971655.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 480aa MW: 55894.3 Da PI: 6.733

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.9	2.8e-28	31	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e++aL+++r++m++ +r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ ++ ++++yf+ql+ XP_022971655.1 31 RWPREETMALLKVRSRMDSVFRDSSIKAPLWEEVSRKLAEFGYNRSAKKCKEKFENIYKYHKRTKDGRSSK--PNGKNYRYFEQLQ 114 8******************************************************************95..66679****98 PP
2	trihelix	96.7	2.1e-30	310	395	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi+++++++ +++++ k+plWee+s m++ g+ r++k+Ckekwen+nk++k++ke++kkr +e+s+tc+yf+ql+a XP_022971655.1 310 RWPKDEINALIQLKTNLQMKYQENGPKGPLWEEISLSMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCSYFQQLDA 395 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MREISPSPEI STAVVNRASE EEVDRNWAGN RWPREETMAL LKVRSRMDSV FRDSSIKAPL 60 WEEVSRKLAE FGYNRSAKKC KEKFENIYKY HKRTKDGRSS KPNGKNYRYF EQLQALDNHP 120 LLPSQADSKE EFPNKIVHNA IPCSIINPDS NFVETTTTLI SMSTTSCSSK ESGGTRKKKK 180 KRKLVDFFGR LMEEVIEKQE KLQKKFVEAL EKCEEERLAR EEEWKMQELA RIKNERERFN 240 HERSIAAAKD AAVLSFLKAF SEQVGTVQFP ESLILMENLT GRQDHSNVDR NTSTRENGND 300 GNSNQISSSR WPKDEINALI QLKTNLQMKY QENGPKGPLW EEISLSMKKL GYDRNAKRCK 360 EKWENINKYF KRVKESNKKR PEDSKTCSYF QQLDALYKQK SKKVIDNHPN YELKPEELLM 420 HMMGSQEENH QPESATDYGK AENADKNQED DDDDDDDNND EDEYYYIVAN NNSNQVEVGS

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MREISPSPEI STAVVNRASE EEVDRNWAGN RWPREETMAL LKVRSRMDSV FRDSSIKAPL  60
WEEVSRKLAE FGYNRSAKKC KEKFENIYKY HKRTKDGRSS KPNGKNYRYF EQLQALDNHP  120
LLPSQADSKE EFPNKIVHNA IPCSIINPDS NFVETTTTLI SMSTTSCSSK ESGGTRKKKK  180
KRKLVDFFGR LMEEVIEKQE KLQKKFVEAL EKCEEERLAR EEEWKMQELA RIKNERERFN  240
HERSIAAAKD AAVLSFLKAF SEQVGTVQFP ESLILMENLT GRQDHSNVDR NTSTRENGND  300
GNSNQISSSR WPKDEINALI QLKTNLQMKY QENGPKGPLW EEISLSMKKL GYDRNAKRCK  360
EKWENINKYF KRVKESNKKR PEDSKTCSYF QQLDALYKQK SKKVIDNHPN YELKPEELLM  420
HMMGSQEENH QPESATDYGK AENADKNQED DDDDDDDNND EDEYYYIVAN NNSNQVEVGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	182	RKKKKKR
2	176	184	RKKKKKRKL
3	177	183	RKKKKKR
4	177	185	RKKKKKRKL
5	178	183	KKKKRK
6	179	184	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-117	Trihelix family protein