PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971654.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 491aa MW: 56938.4 Da PI: 6.0034

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.8	2.9e-28	42	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e++aL+++r++m++ +r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ ++ ++++yf+ql+ XP_022971654.1 42 RWPREETMALLKVRSRMDSVFRDSSIKAPLWEEVSRKLAEFGYNRSAKKCKEKFENIYKYHKRTKDGRSSK--PNGKNYRYFEQLQ 125 8******************************************************************95..66679****98 PP
2	trihelix	96.6	2.2e-30	321	406	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi+++++++ +++++ k+plWee+s m++ g+ r++k+Ckekwen+nk++k++ke++kkr +e+s+tc+yf+ql+a XP_022971654.1 321 RWPKDEINALIQLKTNLQMKYQENGPKGPLWEEISLSMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCSYFQQLDA 406 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MREISPSPEI STAVVNRASE DDDVAASAGL EEEVDRNWAG NRWPREETMA LLKVRSRMDS 60 VFRDSSIKAP LWEEVSRKLA EFGYNRSAKK CKEKFENIYK YHKRTKDGRS SKPNGKNYRY 120 FEQLQALDNH PLLPSQADSK EEFPNKIVHN AIPCSIINPD SNFVETTTTL ISMSTTSCSS 180 KESGGTRKKK KKRKLVDFFG RLMEEVIEKQ EKLQKKFVEA LEKCEEERLA REEEWKMQEL 240 ARIKNERERF NHERSIAAAK DAAVLSFLKA FSEQVGTVQF PESLILMENL TGRQDHSNVD 300 RNTSTRENGN DGNSNQISSS RWPKDEINAL IQLKTNLQMK YQENGPKGPL WEEISLSMKK 360 LGYDRNAKRC KEKWENINKY FKRVKESNKK RPEDSKTCSY FQQLDALYKQ KSKKVIDNHP 420 NYELKPEELL MHMMGSQEEN HQPESATDYG KAENADKNQE DDDDDDDDNN DEDEYYYIVA 480 NNNSNQVEVG S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MREISPSPEI STAVVNRASE DDDVAASAGL EEEVDRNWAG NRWPREETMA LLKVRSRMDS  60
VFRDSSIKAP LWEEVSRKLA EFGYNRSAKK CKEKFENIYK YHKRTKDGRS SKPNGKNYRY  120
FEQLQALDNH PLLPSQADSK EEFPNKIVHN AIPCSIINPD SNFVETTTTL ISMSTTSCSS  180
KESGGTRKKK KKRKLVDFFG RLMEEVIEKQ EKLQKKFVEA LEKCEEERLA REEEWKMQEL  240
ARIKNERERF NHERSIAAAK DAAVLSFLKA FSEQVGTVQF PESLILMENL TGRQDHSNVD  300
RNTSTRENGN DGNSNQISSS RWPKDEINAL IQLKTNLQMK YQENGPKGPL WEEISLSMKK  360
LGYDRNAKRC KEKWENINKY FKRVKESNKK RPEDSKTCSY FQQLDALYKQ KSKKVIDNHP  420
NYELKPEELL MHMMGSQEEN HQPESATDYG KAENADKNQE DDDDDDDDNN DEDEYYYIVA  480
NNNSNQVEVG S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	193	RKKKKKR
2	187	195	RKKKKKRKL
3	188	194	RKKKKKR
4	188	196	RKKKKKRKL
5	189	194	KKKKRK
6	190	195	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-116	Trihelix family protein