PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971005.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 461aa MW: 50672.9 Da PI: 5.5142

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	4e-07	50	91	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_022971005.1 50 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 91 7*****************************657888888876 PP
2	zf-B_box	20.1	1.3e-06	93	134	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_022971005.1 93 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsttsssHKRQ 134 7*****************************.547777888765 PP
3	CCT	58.3	2.8e-20	404	446	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk XP_022971005.1 404 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKV 446 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MLPKWKFLLC FLFSFQGRNS THLAVLGFDK SSDNLSSERF ENSFGKMGVM CDFCGDQRAM 60 VFCRSDVACL CLSCDRNVHS ANALSRRHTR TLLCERCHLQ PASVRCIDER VSLCQNCDWT 120 GHGTSTTSSS HKRQAINCYS GCPSAAELSS IWSFVLEVPS VNDACEKEMG LMSISETDLT 180 GASSPLENNN ACRRMPESTE ARDVCSRDKS NILVGSSSLS DFGSRPHISD QPVELANMAV 240 PKFCCPGTKL PGFCDDDDDI YKEFDMDEMD LNLENYEELF GMSLNHSEDL FENGGIDSLF 300 EAKGFDDSVC HSAVAAEGSS VGVVKPMQPA CSNGASADSV MSTKTEPILC FNSRQASGVS 360 FSGLTGESSA GDYQDCGASS MLLMGEPPPW CAPGTESSIP SSDRNNAVLR YKEKKKTRKF 420 EKRVRYATRK ARADVRRRVK GRFVKVGEAY DYDPLSQTRS C

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MLPKWKFLLC FLFSFQGRNS THLAVLGFDK SSDNLSSERF ENSFGKMGVM CDFCGDQRAM  60
VFCRSDVACL CLSCDRNVHS ANALSRRHTR TLLCERCHLQ PASVRCIDER VSLCQNCDWT  120
GHGTSTTSSS HKRQAINCYS GCPSAAELSS IWSFVLEVPS VNDACEKEMG LMSISETDLT  180
GASSPLENNN ACRRMPESTE ARDVCSRDKS NILVGSSSLS DFGSRPHISD QPVELANMAV  240
PKFCCPGTKL PGFCDDDDDI YKEFDMDEMD LNLENYEELF GMSLNHSEDL FENGGIDSLF  300
EAKGFDDSVC HSAVAAEGSS VGVVKPMQPA CSNGASADSV MSTKTEPILC FNSRQASGVS  360
FSGLTGESSA GDYQDCGASS MLLMGEPPPW CAPGTESSIP SSDRNNAVLR YKEKKKTRKF  420
EKRVRYATRK ARADVRRRVK GRFVKVGEAY DYDPLSQTRS C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-111	CO-like family protein