PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022970009.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 579aa MW: 63550.8 Da PI: 8.5289

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022970009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.8e-30	80	164	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m++++r++ lk+plW+evs+k+ e g+ r++k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea XP_022970009.1 80 RWPRQETLALLKIRSDMDSAFRDATLKGPLWDEVSRKLGEMGYVRNAKKCKEKFENVQKYYKRTKEGRGGR--GDGKTYKFFTQLEA 164 8******************************************************************97..77778*****85 PP
2	trihelix	106.2	2.2e-33	432	517	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r +e+r+++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyfd+l+a XP_022970009.1 432 RWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMNRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFDELDA 517 8*******************************************************************8.78999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MEGVGGGSGS ELFGVTPPLT VEAVSDSQPV EAASPISSRP PASSSLNYEE LIRGGGQMAI 60 DDDALVGEDA GGGGGSSGNR WPRQETLALL KIRSDMDSAF RDATLKGPLW DEVSRKLGEM 120 GYVRNAKKCK EKFENVQKYY KRTKEGRGGR GDGKTYKFFT QLEALHNAAS QNVAASGFGI 180 SNPTPISAVK ISQTPMGIFS PPPTIAAPMG VSFSSYTSSS STEEEEEEEE EEMGFDVEGE 240 PSSVAGSSRK RRRRAAIKGK SGGRTRSHKM MMGFFEGLMK EVLQKQEAMQ QRFLEAIERR 300 EEERMMREET WKRQEMGRLR EEQEKMAQER TISGSRDAAI IAFLQKFTGQ TIQLPSVNIS 360 PSAPQQHYDL SVPVPAPTPV AMPLSPVPPP PPLKTQPPPN TMPFLDHPIS LTNQESSHGG 420 RGDGPSEPIS SRWPKPEVLA LIKLRGGLES RYQEMGPKGP LWEEISAGMN RLGYKRSAKR 480 CKEKWENINK YFKKVKESNK KRREDSKTCP YFDELDALYR KKIPAAGGSD GGGSFCDTAK 540 LEQTHIEMPH TTPAEEQPPP PPPPPPPPPP SPPPTKKTL

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MEGVGGGSGS ELFGVTPPLT VEAVSDSQPV EAASPISSRP PASSSLNYEE LIRGGGQMAI  60
DDDALVGEDA GGGGGSSGNR WPRQETLALL KIRSDMDSAF RDATLKGPLW DEVSRKLGEM  120
GYVRNAKKCK EKFENVQKYY KRTKEGRGGR GDGKTYKFFT QLEALHNAAS QNVAASGFGI  180
SNPTPISAVK ISQTPMGIFS PPPTIAAPMG VSFSSYTSSS STEEEEEEEE EEMGFDVEGE  240
PSSVAGSSRK RRRRAAIKGK SGGRTRSHKM MMGFFEGLMK EVLQKQEAMQ QRFLEAIERR  300
EEERMMREET WKRQEMGRLR EEQEKMAQER TISGSRDAAI IAFLQKFTGQ TIQLPSVNIS  360
PSAPQQHYDL SVPVPAPTPV AMPLSPVPPP PPLKTQPPPN TMPFLDHPIS LTNQESSHGG  420
RGDGPSEPIS SRWPKPEVLA LIKLRGGLES RYQEMGPKGP LWEEISAGMN RLGYKRSAKR  480
CKEKWENINK YFKKVKESNK KRREDSKTCP YFDELDALYR KKIPAAGGSD GGGSFCDTAK  540
LEQTHIEMPH TTPAEEQPPP PPPPPPPPPP SPPPTKKTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	253	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-61	Trihelix family protein