PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022969471.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 608aa MW: 68352.3 Da PI: 4.743

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022969471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	356	399	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_022969471.1 356 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 399 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MQSLMERLRP LVGSKSWNYC VLWKLSQDQR CVEWMNCCCA GTENGQNGGE ELGFPVSQVI 60 PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNTM DSTALDETAG 120 TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT 180 NEIQSKPFVA DRNAVLKDPE IQFEAPGSAA PTLENANVGY DISLDRIRLC SSPMNFLQQF 240 NYSSENRNKN EIFNECSQDS FLTDKQGNHY KFSAENEFQE VDTMQGSLMN TSNIHVQLKE 300 NSECKEQQGE EKDLVKHENG RSDSISDCSD QIDDEDDAIA KYRRRTGQGP QSKNLVAERK 360 RRKKLNERLY NLRALVPKIS KMDKASILGD AIDFVKELQK QVKELQDELE EHTDDENGKT 420 VVSGNNGNQN SVQLPEFLSQ NDKAQNSYHM GVLGSGSILK QNHQDTEGTN NDKTQQMEPQ 480 VEVAQIDGNE FFVKVFCENK RGGFMRLMEA LNALGLEVTN ANVTSYRGLV SNVFKVGKKD 540 SEMVQADDVR DSLLEITKYP CRGWAEIVKA PECIGSRMEP NPHPHQHQTQ NPFQDKAIIN 600 SRLHLLNE

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MQSLMERLRP LVGSKSWNYC VLWKLSQDQR CVEWMNCCCA GTENGQNGGE ELGFPVSQVI  60
PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNTM DSTALDETAG  120
TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT  180
NEIQSKPFVA DRNAVLKDPE IQFEAPGSAA PTLENANVGY DISLDRIRLC SSPMNFLQQF  240
NYSSENRNKN EIFNECSQDS FLTDKQGNHY KFSAENEFQE VDTMQGSLMN TSNIHVQLKE  300
NSECKEQQGE EKDLVKHENG RSDSISDCSD QIDDEDDAIA KYRRRTGQGP QSKNLVAERK  360
RRKKLNERLY NLRALVPKIS KMDKASILGD AIDFVKELQK QVKELQDELE EHTDDENGKT  420
VVSGNNGNQN SVQLPEFLSQ NDKAQNSYHM GVLGSGSILK QNHQDTEGTN NDKTQQMEPQ  480
VEVAQIDGNE FFVKVFCENK RGGFMRLMEA LNALGLEVTN ANVTSYRGLV SNVFKVGKKD  540
SEMVQADDVR DSLLEITKYP CRGWAEIVKA PECIGSRMEP NPHPHQHQTQ NPFQDKAIIN  600
SRLHLLNE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	364	RRRTGQGPQSKNLVAERKRRKK
2	358	365	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-125	bHLH family protein