PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022965395.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 985aa    MW: 108982 Da    PI: 6.4041
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022965395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703e-22128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F +  +++
  XP_022965395.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 219
                     99*****************************9545444.38************************************************4..466 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                      +l+++++ 
  XP_022965395.1 220 SQLLLGIRH 228
                     667888875 PP
2Auxin_resp124.57.4e-41254336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s  rr++Gt++g+sd+d+vrW+nS+Wr+L+
  XP_022965395.1 254 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 336
                     79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    
MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN  60
KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ  120
NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF  180
RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV  240
ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM  300
MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPNR VSIWEVEPVV  360
TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ  420
WMSMQHNNQF PAAQSGILPS MVAPSALHGT LANDDPSKLL CFQAPVMSSS NLQFSKENQQ  480
NQVGQLPATS WSQQQQLQQL PPQQELRQQQ QQPKQSQQQQ TSQSALPNNG VGGANHLSNQ  540
SLQQPLVYSQ LQQQQQQQQQ QQPLVSPASP LFPPQMIQPH PMHQQNQPLP PLPLSNQPQF  600
NTSGGSFQTE KHNSNGFSSL GLMQSQQVPI TQSHNQFKPT TAIRGYSGLT DGDAPSCSTS  660
PSTNNCQVSV SNLLNKNQQG AATLGGDLVV EPATNLPQEL PSKPDLRNKP KFPNSKGLDQ  720
LKYRSTVPDQ LEASSSGTSY CLDAGTIQQT FPLPTCLDND VQSHPQTNIP FSNSIDGWAP  780
DTLLSRGYDS QKDLQNLLSN YEGGVPRDIE TELSTAAIRS QSFGVPNLPF KPGCSNDVNV  840
NEAGALSSGL WANHSQRMRT YTKVQKRGSV GRCIDVTRYK GYDELRHDLA RMFGIEGQLE  900
DPQRTDWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SSEVQQMSLN GNLGHIQAPN  960
QACSGTDSGN AWRGQYDDNS AASFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein