PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022965394.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1080aa MW: 120013 Da PI: 6.5096

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022965394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ XP_022965394.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 217 99***************************9545444.38**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_022965394.1 218 SQLLLGIRH 226 667888875 PP
2	Auxin_resp	124.3	8.3e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022965394.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1080 aa Download sequence
MKAPPNGFVP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE 60 TDFIPNYPNL PSKLVCMLHN VILHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRVFAGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSVIS 240 SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYTKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM 420 SMQHNNQFPA AQSGILPSMV APSALHGTLA NDDPSKLLCF QAPVMSSSNL QFSKENQQNQ 480 VGQLPATSWS QQQQLQQLPP QQELRQQQQQ PKQSQQQQTS QSALPNNGVG GANHLSNQSL 540 QQPLVYSQLQ QQQQQLLAGN VQSHQTSQPS NKNSIETTSL LQETQFQPQI DQQPSLVSKH 600 HQQTQFQQAP LQLLQQSLSQ RTQQQPQVQQ FSQPIIPSEQ QLQWQLLQKL QQQQQQQPLV 660 SPASPLFPPQ MIQPHPMHQQ NQPLPPLPLS NQPQFNTSGG SFQTEKHNSN GFSSLGLMQS 720 QQVPITQSHN QFKPTTAIRG YSGLTDGDAP SCSTSPSTNN CQVSVSNLLN KNQQGAATLG 780 GDLVVEPATN LPQELPSKPD LRNKPKFPNS KGLDQLKYRS TVPDQLEASS SGTSYCLDAG 840 TIQQTFPLPT CLDNDVQSHP QTNIPFSNSI DGWAPDTLLS RGYDSQKDLQ NLLSNYEGGV 900 PRDIETELST AAIRSQSFGV PNLPFKPGCS NDVNVNEAGA LSSGLWANHS QRMRTYTKVQ 960 KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPQRT DWKLVYVDHE NDILLVGDDP 1020 WEEFVSCVQS IKILSSSEVQ QMSLNGNLGH IQAPNQACSG TDSGNAWRGQ YDDNSAASFN

Sequence ? help Back to Top

Protein Sequence Length: 1080 aa Download sequence

MKAPPNGFVP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPNYPNL PSKLVCMLHN VILHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRVFAGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYTKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM  420
SMQHNNQFPA AQSGILPSMV APSALHGTLA NDDPSKLLCF QAPVMSSSNL QFSKENQQNQ  480
VGQLPATSWS QQQQLQQLPP QQELRQQQQQ PKQSQQQQTS QSALPNNGVG GANHLSNQSL  540
QQPLVYSQLQ QQQQQLLAGN VQSHQTSQPS NKNSIETTSL LQETQFQPQI DQQPSLVSKH  600
HQQTQFQQAP LQLLQQSLSQ RTQQQPQVQQ FSQPIIPSEQ QLQWQLLQKL QQQQQQQPLV  660
SPASPLFPPQ MIQPHPMHQQ NQPLPPLPLS NQPQFNTSGG SFQTEKHNSN GFSSLGLMQS  720
QQVPITQSHN QFKPTTAIRG YSGLTDGDAP SCSTSPSTNN CQVSVSNLLN KNQQGAATLG  780
GDLVVEPATN LPQELPSKPD LRNKPKFPNS KGLDQLKYRS TVPDQLEASS SGTSYCLDAG  840
TIQQTFPLPT CLDNDVQSHP QTNIPFSNSI DGWAPDTLLS RGYDSQKDLQ NLLSNYEGGV  900
PRDIETELST AAIRSQSFGV PNLPFKPGCS NDVNVNEAGA LSSGLWANHS QRMRTYTKVQ  960
KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPQRT DWKLVYVDHE NDILLVGDDP  1020
WEEFVSCVQS IKILSSSEVQ QMSLNGNLGH IQAPNQACSG TDSGNAWRGQ YDDNSAASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein