PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022965393.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1082aa MW: 120171 Da PI: 6.5096

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022965393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ XP_022965393.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 219 99***************************9545444.38**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_022965393.1 220 SQLLLGIRH 228 667888875 PP
2	Auxin_resp	124.3	8.3e-41	254	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022965393.1 254 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 336 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence
MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN 60 KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ 120 NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF 180 RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV 240 ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM 300 MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPNR VSIWEVEPVV 360 TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ 420 WMSMQHNNQF PAAQSGILPS MVAPSALHGT LANDDPSKLL CFQAPVMSSS NLQFSKENQQ 480 NQVGQLPATS WSQQQQLQQL PPQQELRQQQ QQPKQSQQQQ TSQSALPNNG VGGANHLSNQ 540 SLQQPLVYSQ LQQQQQQLLA GNVQSHQTSQ PSNKNSIETT SLLQETQFQP QIDQQPSLVS 600 KHHQQTQFQQ APLQLLQQSL SQRTQQQPQV QQFSQPIIPS EQQLQWQLLQ KLQQQQQQQP 660 LVSPASPLFP PQMIQPHPMH QQNQPLPPLP LSNQPQFNTS GGSFQTEKHN SNGFSSLGLM 720 QSQQVPITQS HNQFKPTTAI RGYSGLTDGD APSCSTSPST NNCQVSVSNL LNKNQQGAAT 780 LGGDLVVEPA TNLPQELPSK PDLRNKPKFP NSKGLDQLKY RSTVPDQLEA SSSGTSYCLD 840 AGTIQQTFPL PTCLDNDVQS HPQTNIPFSN SIDGWAPDTL LSRGYDSQKD LQNLLSNYEG 900 GVPRDIETEL STAAIRSQSF GVPNLPFKPG CSNDVNVNEA GALSSGLWAN HSQRMRTYTK 960 VQKRGSVGRC IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ RTDWKLVYVD HENDILLVGD 1020 DPWEEFVSCV QSIKILSSSE VQQMSLNGNL GHIQAPNQAC SGTDSGNAWR GQYDDNSAAS 1080 FN

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence

MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN  60
KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ  120
NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF  180
RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV  240
ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM  300
MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPNR VSIWEVEPVV  360
TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ  420
WMSMQHNNQF PAAQSGILPS MVAPSALHGT LANDDPSKLL CFQAPVMSSS NLQFSKENQQ  480
NQVGQLPATS WSQQQQLQQL PPQQELRQQQ QQPKQSQQQQ TSQSALPNNG VGGANHLSNQ  540
SLQQPLVYSQ LQQQQQQLLA GNVQSHQTSQ PSNKNSIETT SLLQETQFQP QIDQQPSLVS  600
KHHQQTQFQQ APLQLLQQSL SQRTQQQPQV QQFSQPIIPS EQQLQWQLLQ KLQQQQQQQP  660
LVSPASPLFP PQMIQPHPMH QQNQPLPPLP LSNQPQFNTS GGSFQTEKHN SNGFSSLGLM  720
QSQQVPITQS HNQFKPTTAI RGYSGLTDGD APSCSTSPST NNCQVSVSNL LNKNQQGAAT  780
LGGDLVVEPA TNLPQELPSK PDLRNKPKFP NSKGLDQLKY RSTVPDQLEA SSSGTSYCLD  840
AGTIQQTFPL PTCLDNDVQS HPQTNIPFSN SIDGWAPDTL LSRGYDSQKD LQNLLSNYEG  900
GVPRDIETEL STAAIRSQSF GVPNLPFKPG CSNDVNVNEA GALSSGLWAN HSQRMRTYTK  960
VQKRGSVGRC IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ RTDWKLVYVD HENDILLVGD  1020
DPWEEFVSCV QSIKILSSSE VQQMSLNGNL GHIQAPNQAC SGTDSGNAWR GQYDDNSAAS  1080
FN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein