PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022964470.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 702aa    MW: 76555.7 Da    PI: 5.8228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022964470.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3312.2e-1013447013374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L+++ e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL+  l++ ++  ++ l +s+   ++ + ++aa+k fse+sP+l+f+++
  XP_022964470.1 344 DQLFKAIELIETGNSVLAQGILARLNHHlSSPIGKPFQRAAFYFKEALQLLLQNPSNP-SSNLISSP---YSIIFKIAAYKSFSELSPVLQFANF 434
                     79************************999************************93333.33333333...459********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle. 190
                     t Nqa+lea++g +r+HiiDfdi++G+QW++L+q+La R +g+  l+iT+++s +++++ el  t+e+L++fA+ lg+ fe ++l +++l++ + 
  XP_022964470.1 435 TSNQALLEAFNGFNRLHIIDFDIGYGGQWASLMQELALR-NGSGFLKITAFASTSTHDEFELGFTQENLKNFANDLGIGFELEILNMESLNSGSw 528
                     ***************************************.5679***********9*****************************7777776642 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +  L+v ++Ea+aVnl +   +++++ ++l+     vL++vk+l Pk+vv+v++  ++ +  F +r+++al++ys l++s++a    + ++++k+
  XP_022964470.1 529 PLPLNVTENEAIAVNLPV--GSFFNDALPLPM----VLRFVKHLCPKIVVCVNRGGNRMDVAFPQRVINALHCYSGLLESMDAV-TVNMDTQMKI 616
                     66789999********99..788989999999....*********************************************776.467899**** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er ll++ i+++v   +a+    +e+l  Wr+ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W++++L+svSaWr
  XP_022964470.1 617 ERYLLQPGIEKLVRSGEAW----KERLPPWRSLLLSSGFSPLTFSNFTESQADCLVQRTPVQGFHVEKRQSSLVLCWQRKELMSVSAWR 701
                     ******************9....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MKAMPLSLPF EDIRPNGVLN FSSVSDSPPP PPQLRRHNWS CCTDSTNLLK DICYVGAAEP  60
TSVLDTRRSP SPPTSSSTLS SSFGGGGGGN ASTDTAVVAP PSSLPQNPSP LDKCGGAGGG  120
GALGIDDWES VLPESPGQGP SVLGLIMSDV EDPSLGLNKL LQSGGGGGGG GGSHLDLDFS  180
GVDHGFVFEP NTLAGESIVD PSCNDFHNGR LFPGVFHNQN QMMEAIDEKP QIFNSPQVMM  240
NQNQTQFTQN PALFMPLPYG SPVQDHHQNH HHSLLVPPPA KRFNSGSIGA SYQEIMNRRQ  300
QQAQQVQVQM FAQQQRASIA AAMAKQKMVD EEIANQQLQP AISDQLFKAI ELIETGNSVL  360
AQGILARLNH HLSSPIGKPF QRAAFYFKEA LQLLLQNPSN PSSNLISSPY SIIFKIAAYK  420
SFSELSPVLQ FANFTSNQAL LEAFNGFNRL HIIDFDIGYG GQWASLMQEL ALRNGSGFLK  480
ITAFASTSTH DEFELGFTQE NLKNFANDLG IGFELEILNM ESLNSGSWPL PLNVTENEAI  540
AVNLPVGSFF NDALPLPMVL RFVKHLCPKI VVCVNRGGNR MDVAFPQRVI NALHCYSGLL  600
ESMDAVTVNM DTQMKIERYL LQPGIEKLVR SGEAWKERLP PWRSLLLSSG FSPLTFSNFT  660
ESQADCLVQR TPVQGFHVEK RQSSLVLCWQ RKELMSVSAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein