PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964016.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 248aa MW: 25235.5 Da PI: 7.5024

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964016.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.9	2.6e-41	31	132	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael XP_022964016.1 31 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPIHKRPDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVSLQAEL 125 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 ++l+++l XP_022964016.1 126 SYLQAQL 132 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MSANPSTSGG GSGGGGVGLG SGSGSGGGGG PCGACKFLRR KCVPGCIFAP YFDSEQGAAH 60 FAAVHKVFGA SNVSKLLLHI PIHKRPDAVV TICYEAQARL RDPVYGCVSH IFALQQQVVS 120 LQAELSYLQA QLASLELPSP PNPPPPPPPP SFQGVPPLSI SDLPSPPSLP ATYDLSSLFD 180 PMAQPAWVLP QQRLDPRQFT GGGGGSGGSS GLSTVAGEGD LQALARELLH RHGAPPSSDS 240 SSPPSVSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	4e-68	LBD family protein