PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963425.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 363aa MW: 40593.8 Da PI: 5.3473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963425.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	2e-11	206	249	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L XP_022963425.1 206 LMAERRRRRRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 249 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MFIIFPQLGA ISCSYYSVLH FLHTQRGKKM ELTQYGFLEE LLASTPWTSS SSSSSYSNGF 60 NDFFPNGCNF SSFDEIPQMG TSISPHFPGF QTPTDFSFAD QHLYGSFLEG FALPEVDSSS 120 YTKNNETPPF VSVEEISNKN SGFPPTAMEE EEFGFMECEA APNVCKQEME VMGGRESNDS 180 KMGVAELGKR RSNKAKKLDG QPSKNLMAER RRRRRLNDRL SMLRAIVPKI SKMDRTSILG 240 DTIDYVKELL ERIKNLKEED SNHASLNGIS KERKSNEVLF DVERKERETR IGICCTTRPG 300 LLLSTVNTLE ALGLEIQQCV ISCFNDFSMQ ASCSEGSSQK AVPSSDDIKE ALFRNAGYGG 360 KCL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MFIIFPQLGA ISCSYYSVLH FLHTQRGKKM ELTQYGFLEE LLASTPWTSS SSSSSYSNGF  60
NDFFPNGCNF SSFDEIPQMG TSISPHFPGF QTPTDFSFAD QHLYGSFLEG FALPEVDSSS  120
YTKNNETPPF VSVEEISNKN SGFPPTAMEE EEFGFMECEA APNVCKQEME VMGGRESNDS  180
KMGVAELGKR RSNKAKKLDG QPSKNLMAER RRRRRLNDRL SMLRAIVPKI SKMDRTSILG  240
DTIDYVKELL ERIKNLKEED SNHASLNGIS KERKSNEVLF DVERKERETR IGICCTTRPG  300
LLLSTVNTLE ALGLEIQQCV ISCFNDFSMQ ASCSEGSSQK AVPSSDDIKE ALFRNAGYGG  360
KCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	216	ERRRRRRL
2	210	215	RRRRRR
3	213	220	RRRLNDRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	7e-67	bHLH family protein