PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022962872.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 596aa    MW: 65977.5 Da    PI: 4.6617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022962872.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.62.1e-1132285962374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+ +s+++ ++a ++  +l+e +s++gdp++R+a+yf+eAL +rl+    ++ + l + e++   s++ + ++k++++++P+ kf+hl
  XP_022962872.1 228 LKTLIECAR-LSESEPNRAAQIFIQLKESSSEHGDPTERVAFYFLEALYRRLSL---QTENRLVCLEST---SDDFTISYKALNDACPYSKFAHL 315
                     689******.566688899999*******************************9...889999999999...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle +e+++++HiiDf+isqG+QW+aLlqaLa+R++g+p  +Ri g+ +p  g   +++l +tg+rLa+fA+ l+++fef+  + + +e+
  XP_022962872.1 316 TANQAILEMTENASKIHIIDFGISQGVQWAALLQALATRSSGKPtGIRISGIPAPMLGncPATALFATGNRLAEFAKLLELNFEFDR-ILTPIEE 409
                     ****************************************887769********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++r++++E+laVn++lql++llde+  +     +vL+l ksl+Pk+v++ e ea++n+  F++rf +al+yysa+f+sl+ klpr+s+er 
  XP_022962872.1 410 LKESSFRIDSDETLAVNFMLQLYNLLDETPRVVL---NVLRLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRNSNERL 501
                     ***************************9999999...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      +E+ +lgr+i ++v  e +   ++er+e +e+W++++e++GF++v+ls++a +qa+ ll k++ s +y++ e+s  ++ l W++ p+++vS+Wr
  XP_022962872.1 502 QLEKLVLGRQIGDIVGPESSPgaKIERMEDKEQWKMMMENCGFEAVNLSHYAKSQAQILLWKYDySCEYSLIESSPGFLsLAWNQVPIITVSSWR 596
                     ****************99886669****************************************9999*99999888888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    
MANMCADSGN LMAIAQQVMK QKQQQEQQQQ QPPQQPPQQQ LTSPSTFTLN PWSGSNHGLS  60
SPDLGFGLAG AGFSDPFQVQ RVVDGGETSF QFPNLEHHSS SFRYPDFDGG AAADFDSDEW  120
MESLMAGGDS TDSSNLPSGC DAWHANSDIA LYGDDPFVPC PSRLTIPCSS PSDLNRVIFP  180
EPPKNQAAIL PPVVSWTGLT PKTPPVVVKD TNGCSSSSAE NEPKPPLLKT LIECARLSES  240
EPNRAAQIFI QLKESSSEHG DPTERVAFYF LEALYRRLSL QTENRLVCLE STSDDFTISY  300
KALNDACPYS KFAHLTANQA ILEMTENASK IHIIDFGISQ GVQWAALLQA LATRSSGKPT  360
GIRISGIPAP MLGNCPATAL FATGNRLAEF AKLLELNFEF DRILTPIEEL KESSFRIDSD  420
ETLAVNFMLQ LYNLLDETPR VVLNVLRLAK SLNPKIVTLG EYEASLNRVG FFNRFKNALR  480
YYSAVFESLD PKLPRNSNER LQLEKLVLGR QIGDIVGPES SPGAKIERME DKEQWKMMME  540
NCGFEAVNLS HYAKSQAQIL LWKYDYSCEY SLIESSPGFL SLAWNQVPII TVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein