PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022962351.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 288aa MW: 31520.6 Da PI: 9.8706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022962351.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l+++v+ +G+++W++I++ ++ gR++k+c++rw + XP_022962351.1 12 KGPWSPEEDESLKRLVQTYGPRNWSLISKSVP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	55.5	1.3e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd +++a++++G++ W+tIar ++ gRt++ +k++w++ XP_022962351.1 66 PFTAEEDNAIIRAHAKFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MESMRKDVDR IKGPWSPEED ESLKRLVQTY GPRNWSLISK SVPGRSGKSC RLRWCNQLSP 60 RVEHRPFTAE EDNAIIRAHA KFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSAMGDDF 120 NDPDLHQPLK RSASVGPGPV IVASGFGFNP SSPSGSELSD SSLSPPLPVY RPLARSGSIV 180 PSNHEQVANS NDPPTSLCLS LPGSISTSGY ASDSVASPTR NMVQATPTTG GVGRESELFS 240 AEFLGAMQEM IKIEVRKYMS GIEHKGWHLQ TDAIRNAVVK RIGISKID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-80	MYB family protein