PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957800.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 553aa MW: 61025.6 Da PI: 6.0345

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957800.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_022957800.1 38 KGPWTSNEDEILIEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	49.5	9.4e-16	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++G++ W++ a++++ gRt++++k++w++ XP_022957800.1 91 KGAFTAEEEHTIIHLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MRRTKNGSED NIPSSDEILS PLVDEDSGGN VSGGCLKKGP WTSNEDEILI EYVKKHGEGN 60 WNAVQKHSGL SRCGKSCRLR WANHLRPNLK KGAFTAEEEH TIIHLHAKMG NKWARMAAHL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VSLRAWQHRH NQDTGGSNIV GKDHHDLLQA 180 NSYDAIPDVK FQGKPHNALS YMPQLPEISS CMLKRGLDSS QYGNFMPSTM HRQKRYRESA 240 PLFSGPDGSV KTPFHQFEDN SYDQVAQSYG SPFPLDPNAA TKNAMSFGSF EGSHSLTNGN 300 SSASQHSKET EKLELPSLQY PETDLCSWET PIQPAMFESV DPFIQSPPTF MLGSDCLSPR 360 NSGLLEALIY ESKTIGCPKN HPSHKNSNSC SITPGDVTDS YNMTAGKTEI DDYTEAVSPF 420 GHSTSTLFSE CTPISATGSS YEDPALTEAF SGSNVKSEPL DHVWTPDREK EAKNGVEFTR 480 PDALLASDWQ GQSSGIEKET TSMTDALTLL LGDDLAADYK HLPSGISTTH SGWGLDSCSW 540 NNMPPVCQMS DIP

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MRRTKNGSED NIPSSDEILS PLVDEDSGGN VSGGCLKKGP WTSNEDEILI EYVKKHGEGN  60
WNAVQKHSGL SRCGKSCRLR WANHLRPNLK KGAFTAEEEH TIIHLHAKMG NKWARMAAHL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VSLRAWQHRH NQDTGGSNIV GKDHHDLLQA  180
NSYDAIPDVK FQGKPHNALS YMPQLPEISS CMLKRGLDSS QYGNFMPSTM HRQKRYRESA  240
PLFSGPDGSV KTPFHQFEDN SYDQVAQSYG SPFPLDPNAA TKNAMSFGSF EGSHSLTNGN  300
SSASQHSKET EKLELPSLQY PETDLCSWET PIQPAMFESV DPFIQSPPTF MLGSDCLSPR  360
NSGLLEALIY ESKTIGCPKN HPSHKNSNSC SITPGDVTDS YNMTAGKTEI DDYTEAVSPF  420
GHSTSTLFSE CTPISATGSS YEDPALTEAF SGSNVKSEPL DHVWTPDREK EAKNGVEFTR  480
PDALLASDWQ GQSSGIEKET TSMTDALTLL LGDDLAADYK HLPSGISTTH SGWGLDSCSW  540
NNMPPVCQMS DIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-112	MYB family protein