PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022953291.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 195aa    MW: 22359.5 Da    PI: 9.5639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022953291.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.9e-095778425
                    ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                    + Cr f+r   C yGd+C++ H
  XP_022953291.1 57 KVCRQFQRRRKCAYGDQCRYLH 78
                    68******************** PP
2zf-CCCH32.21.9e-10138161225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     kt+lC   + tG C+yG+ C+FaH
  XP_022953291.1 138 KTRLCYPLQTTGSCSYGAVCRFAH 161
                     8*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MPSKSRIPPS NNRNIGYDHE LGCMSTPALN DTHRRLPSLR GIGFHEGQLS GRSNEMKVCR  60
QFQRRRKCAY GDQCRYLHEN PEKTRAFGSS TQNYEVRIVD SGHVMDRRRG LDQLEEVRSK  120
VQTEIVVRGE IPKPVRCKTR LCYPLQTTGS CSYGAVCRFA HEEAGIDVVL VFFVFGENRT  180
TKARALHCIT TWERI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-13C3H family protein