PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022951562.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 550aa    MW: 60438.2 Da    PI: 6.8765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022951562.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.16e-22106207199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a++          ++ +   l+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF   ++ 
  XP_022951562.1 106 FAKILTSSDANNGGGFSVPRCCADSVfpplnyqADPPVQ--NLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFA--KNL 196
                     89*********************999****996555555..69999********************************************..678 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ ++v+++r+
  XP_022951562.1 197 RGDMFVGIRRA 207
                     8889****997 PP
2Auxin_resp81.71.7e-27263345183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a++ ++Fe vY+Pra++seFvv+vekv+++ + ++  G+R+kma+ete s+ + ++Gtv++ s  +   W +S+Wr+L+
  XP_022951562.1 263 AAELAAQFKPFELVYYPRAGRSEFVVQVEKVNESKNYQWYSGTRVKMAMETEYSKMTWYQGTVTSASVPEHGPWMGSPWRMLE 345
                     67889999**********************************************99999**********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MDRQLWQAFA GKSVHIHTVG SEVYYFVQGH VEQATYIPSL SQSVFSNPAT KCLVTGTDFH  60
ADSLSDEVCI KLNLHPIRPG RDESVVVSRF GRCDDNGGER DKIESFAKIL TSSDANNGGG  120
FSVPRCCADS VFPPLNYQAD PPVQNLSITD VHGVVWNFRH IYRGTPRRHL LTTGWSKFVN  180
HKKLIAGDSV VFAKNLRGDM FVGIRRASTS ITRAIAGGDC GRWNSQNGGA RCSLEENCSG  240
DGGTKVFSRR NIGKLPAEAV ANAAELAAQF KPFELVYYPR AGRSEFVVQV EKVNESKNYQ  300
WYSGTRVKMA METEYSKMTW YQGTVTSASV PEHGPWMGSP WRMLEVTWDE IDTLQSAKYV  360
SPWEVELATP TPPIQPPLHP AKKFRGLPKS GMLNGEAELF SPLMNFVDST MEQFNPSLLN  420
LNSFPAGMQG ARQKLFCESR LFNPCKEMTP LTCDESSMSE LNAAKKMQMV STDLLIGSVQ  480
FDTLSPDSQA SVLSFATGTA ENQNCCNSAK AGVNSIQLFG QVIYMNPPVE NGLENGVSTN  540
DGGKNPNQSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-137ARF family protein