PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950705.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 382aa MW: 40945.6 Da PI: 5.2078

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950705.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.8e-16	62	107	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + XP_022950705.1 62 KGPWSPEEDAILSRLVGKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 107 79****************************.*********985 PP
2	Myb_DNA-binding	54.7	2.3e-17	114	158	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar + gRt++ +k++w++ XP_022950705.1 114 RKPFTDEEDRIIVAAHAVHGNK-WAAIARLLR-GRTDNAIKNHWNST 158 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEDAAATEVG ASAAEEGGGG GGGVNECDAV ASVADCGSGD EAVPMVGEGE TTGGRGGKDR 60 VKGPWSPEED AILSRLVGKF GARNWSLIAR GIAGRSGKSC RLRWCNQLDP SVKRKPFTDE 120 EDRIIVAAHA VHGNKWAAIA RLLRGRTDNA IKNHWNSTLR RRCTELERIK LESGNVVDDA 180 SLEKTKGSSE ETLSCGDVNS FKSFEGKDAS SREHMDDQFE DKVPIASEGQ FTHEVKEQST 240 IYRPVARVSA FSVYNPLDDQ ASLRAFIRPV PMQGPLIQAS KPEVEASKLL EGVYGDRSVP 300 HQCGHGCCQS HNQGSPLDSL LGPEFVDFSE PPLSFPSFEL AAIATDISNL AWLKSGLENG 360 SVRAMGDSAG RLNGSQMQMG RL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEDAAATEVG ASAAEEGGGG GGGVNECDAV ASVADCGSGD EAVPMVGEGE TTGGRGGKDR  60
VKGPWSPEED AILSRLVGKF GARNWSLIAR GIAGRSGKSC RLRWCNQLDP SVKRKPFTDE  120
EDRIIVAAHA VHGNKWAAIA RLLRGRTDNA IKNHWNSTLR RRCTELERIK LESGNVVDDA  180
SLEKTKGSSE ETLSCGDVNS FKSFEGKDAS SREHMDDQFE DKVPIASEGQ FTHEVKEQST  240
IYRPVARVSA FSVYNPLDDQ ASLRAFIRPV PMQGPLIQAS KPEVEASKLL EGVYGDRSVP  300
HQCGHGCCQS HNQGSPLDSL LGPEFVDFSE PPLSFPSFEL AAIATDISNL AWLKSGLENG  360
SVRAMGDSAG RLNGSQMQMG RL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-102	MYB family protein