PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022945559.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 470aa    MW: 52717.4 Da    PI: 5.2638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022945559.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.73.9e-137484641373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA+ v+ g+ e+a+  L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++    ++ ee+ a++lf+e++P+lk+++
  XP_022945559.1  48 LIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKIL--SVPEEILAQRLFFELCPFLKLAY 140
                     689*************************************************************988887..59********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege+++HiiDf   +++QW++Llq+L +Rp+gpp++RiTg+++    +ke le+++ rL++ Ae+ ++pf+f++ v+++le+l+
  XP_022945559.1 141 VITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHVRITGIHE----QKEVLEQMAVRLTEEAEKWDIPFQFTP-VVSKLENLD 230
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230
                     le+Lrvk+gEalaV++vl+lh++l                                                       + s+    + +++L++
  XP_022945559.1 231 LESLRVKTGEALAVSSVLELHTILatdddktktspsasknlqkllrmkqrtlgewletdslqvfssspdsasvcspsglNPSQ----KMNSFLNA 321
                     *********************************************************************99999754444444....5566**** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +++lsPkv+v++eqe+++n++ ++er+leal++y+alfd+le++++r s er+ vE++llg+ei+n++acegaerrerhe+lekW  r+e++GF+
  XP_022945559.1 322 LWGLSPKVMVITEQESNLNGSGLMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERRERHEKLEKWIVRFESVGFG 416
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      v ls++ +   ++ll+  + dgy+++ee+g l+++W+drpL+svSaW
  XP_022945559.1 417 RVGLSYNSMFLGNRLLQSNGYDGYKIKEENGFLFICWQDRPLFSVSAW 464
                     ************************************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MAGMFNGEGS SSVTSSPLQL FPWSLSPGIG SPYPFLRELK SEERGLCLIH LLLACANQVA  60
IGNIENANVG LEQISHLASP DGDTMQRIAA YFTEALADRI LKSWPGLHKA LNSTKILSVP  120
EEILAQRLFF ELCPFLKLAY VITNQAIIEA MEGERMIHII DFKSCEPAQW INLLQTLKDR  180
PDGPPHVRIT GIHEQKEVLE QMAVRLTEEA EKWDIPFQFT PVVSKLENLD LESLRVKTGE  240
ALAVSSVLEL HTILATDDDK TKTSPSASKN LQKLLRMKQR TLGEWLETDS LQVFSSSPDS  300
ASVCSPSGLN PSQKMNSFLN ALWGLSPKVM VITEQESNLN GSGLMERVLE ALNFYAALFD  360
CLESTVSRSS IERQRVEKML LGEEIKNIIA CEGAERRERH EKLEKWIVRF ESVGFGRVGL  420
SYNSMFLGNR LLQSNGYDGY KIKEENGFLF ICWQDRPLFS VSAWGFQRQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein