PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944226.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 409aa MW: 44488.8 Da PI: 5.4942

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944226.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.4e-06	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++ ++ +C+++ +lC +C + H+ Ht++ XP_022944226.1 4 MCDFCGAQKSMVYCRSDAACLCLSCDRNVHSAnalskrHTRT 45 7****99*******************657888888876 PP
2	zf-B_box	19.5	2.1e-06	47	89	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg........Htvv 40 C++++ +++ C d + lC++C +H g H+++ XP_022944226.1 47 LCEKCHTQPAVARCIDERISLCQNCDWMGH-GtstsasssHKRQ 89 7***************************99.5477777777765 PP
3	CCT	61.7	2.4e-21	352	395	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ XP_022944226.1 352 RNNAVLRYKEKKKTRKFEKTVRYATRKARADGRRRVKGRFVKAG 395 99***************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGFMCDFCGA QKSMVYCRSD AACLCLSCDR NVHSANALSK RHTRTLLCEK CHTQPAVARC 60 IDERISLCQN CDWMGHGTST SASSSHKRQA INCYSGCPSA AELSSIWSFV LDVPSGNDAC 120 ETELGLMSIA ETDLTGAGQR MLGSTEASDV CSREKSNVLD GSSSLTDFRS RPHTSGQPVE 180 LANVALPKFC CPGTKVAGFF GEDDDLYKEF DMDEMDLNLE NYEDLFSMSL NHSEEFFENG 240 GIDSLFDSRG LSFEDSVCHS AVAAEGSSVG VVKPMQPACS NGASADSVMS TKTEPILCFN 300 SRQAQSGVSF SGLPGESSVG EYQDCGASSM LLRGEPPWCV PGTESSFPSI ERNNAVLRYK 360 EKKKTRKFEK TVRYATRKAR ADGRRRVKGR FVKAGEAYDC DPLNRTRSC

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGFMCDFCGA QKSMVYCRSD AACLCLSCDR NVHSANALSK RHTRTLLCEK CHTQPAVARC  60
IDERISLCQN CDWMGHGTST SASSSHKRQA INCYSGCPSA AELSSIWSFV LDVPSGNDAC  120
ETELGLMSIA ETDLTGAGQR MLGSTEASDV CSREKSNVLD GSSSLTDFRS RPHTSGQPVE  180
LANVALPKFC CPGTKVAGFF GEDDDLYKEF DMDEMDLNLE NYEDLFSMSL NHSEEFFENG  240
GIDSLFDSRG LSFEDSVCHS AVAAEGSSVG VVKPMQPACS NGASADSVMS TKTEPILCFN  300
SRQAQSGVSF SGLPGESSVG EYQDCGASSM LLRGEPPWCV PGTESSFPSI ERNNAVLRYK  360
EKKKTRKFEK TVRYATRKAR ADGRRRVKGR FVKAGEAYDC DPLNRTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-128	CO-like family protein