PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022939142.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 179aa    MW: 19967.1 Da    PI: 8.1328
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022939142.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.97.1e-43171161100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kfa+vh++FGa nv+k+l++lpe++r da+sslvyeA+ar+rdPvyG++g i++lq+q+++l+++la
  XP_022939142.1  17 PCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQVQLA 111
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  XP_022939142.1 112 VAKAE 116
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MQSPPPPPPP LMVVLSPCAA CKILRRRCVD KCVLAPYFPP TEPLKFAAVH RIFGAGNVIK  60
FLQELPENQR ADATSSLVYE ANARIRDPVY GCTGSIFQLQ NQVSELQVQL AVAKAEVHKM  120
LAQHANLLAL MCTETSQVRV EGQQVPVLRQ DHFPFTDLNP IPHNYKSSNI FWDSSWTSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-65LBD family protein