PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938957.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

NF-X1

Protein Properties

Length: 870aa MW: 97471.5 Da PI: 8.4706

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938957.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	27.1	9e-09	236	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+HkC ++CHeG CppC+ XP_022938957.1 236 CGRHKCAEICHEGSCPPCR 254 ******************7 PP
2	zf-NF-X1	17.2	1.1e-05	396	415	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+ G+CppC++ XP_022938957.1 396 CGRHACRRRCCDGDCPPCSE 415 ******************85 PP
3	zf-NF-X1	16.9	1.4e-05	417	441	1	19
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG +HkC ++CH+GpC pCp XP_022938957.1 417 CGrrlrckNHKCPSPCHRGPCAPCP 441 777777779***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MISTHDHRRT ISDSDSNSDD DNTGSQSLRH LDLSDSVFKA YFEFTGRSTT TADLSKIQSF 60 LTSSSSGALS CLICLERIRL TDPTWSCYSL CFDVFHLFCI QSWARQASDL AAARAATRSL 120 VSPDKPDEHS GWNCPKCRVE YSKSSIPKKY FCFCGKLENP PSDDPWILPH SCGEVCGRPL 180 KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVRDARRCG FKNFSCNNIC SKVLDCGRHK 240 CAEICHEGSC PPCRIQGVFK CQCGKTVEKR ECWDRNFRCE IECNKLLGCG KHSCNEGCHS 300 GECGQCPFKG KRTCPCGKKA YEGIPCDVAV SLCGATCEKM LPCGYHRCPE RCHRGPCIGT 360 CRTVVFKSCR CGSLRKEIPC YQDLACERKC QRMRDCGRHA CRRRCCDGDC PPCSEICGRR 420 LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPVPPLC 480 SHRSSLKPHK CHYGACPPCR RICEEEYSCG HKCQLRCHGP KPPPKPEFTL KPKKKKAFHP 540 EEPSPGSLCP PCPELVWRPC LGQHIGAERM MVCSNITQFS CDNLCGNPLP CTNHYCTKIC 600 HALKSQPPSS SRKDLSESCE KCKLPCEKER KPKCAHPCPV KCHPGDCPPC KVLLKRSCHC 660 GTMVHVFECM YYITLPPEEQ MAVLSCGGPC HRKLPHCTHL CSETCHPGKC PSPENCSKKV 720 TVRCGCQTLK KEWLCKDVQA AYSKTDRDPK DIPKTQFGYG LLPCGSDCKR KIQVVESELS 780 QRKPEVAGVK EADTKKQVSK RKRRRDTIQE VKPISRLQKL FGALKYTLVI MVIMIAVVLI 840 SLYGYKGLLW LNDWMNEAEK QRPRRRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MISTHDHRRT ISDSDSNSDD DNTGSQSLRH LDLSDSVFKA YFEFTGRSTT TADLSKIQSF  60
LTSSSSGALS CLICLERIRL TDPTWSCYSL CFDVFHLFCI QSWARQASDL AAARAATRSL  120
VSPDKPDEHS GWNCPKCRVE YSKSSIPKKY FCFCGKLENP PSDDPWILPH SCGEVCGRPL  180
KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVRDARRCG FKNFSCNNIC SKVLDCGRHK  240
CAEICHEGSC PPCRIQGVFK CQCGKTVEKR ECWDRNFRCE IECNKLLGCG KHSCNEGCHS  300
GECGQCPFKG KRTCPCGKKA YEGIPCDVAV SLCGATCEKM LPCGYHRCPE RCHRGPCIGT  360
CRTVVFKSCR CGSLRKEIPC YQDLACERKC QRMRDCGRHA CRRRCCDGDC PPCSEICGRR  420
LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPVPPLC  480
SHRSSLKPHK CHYGACPPCR RICEEEYSCG HKCQLRCHGP KPPPKPEFTL KPKKKKAFHP  540
EEPSPGSLCP PCPELVWRPC LGQHIGAERM MVCSNITQFS CDNLCGNPLP CTNHYCTKIC  600
HALKSQPPSS SRKDLSESCE KCKLPCEKER KPKCAHPCPV KCHPGDCPPC KVLLKRSCHC  660
GTMVHVFECM YYITLPPEEQ MAVLSCGGPC HRKLPHCTHL CSETCHPGKC PSPENCSKKV  720
TVRCGCQTLK KEWLCKDVQA AYSKTDRDPK DIPKTQFGYG LLPCGSDCKR KIQVVESELS  780
QRKPEVAGVK EADTKKQVSK RKRRRDTIQE VKPISRLQKL FGALKYTLVI MVIMIAVVLI  840
SLYGYKGLLW LNDWMNEAEK QRPRRRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	800	805	KRKRRR
2	801	805	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein