PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938879.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 347aa MW: 38494.3 Da PI: 8.3308

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938879.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.4	6.5e-15	261	286	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_022938879.1 261 FKTELCNKWQETGSCPYGDHCQFAHG 286 79***********************8 PP
2	zf-CCCH	18.4	3.9e-06	299	323	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H XP_022938879.1 299 YKTEVCRMVLA-GvVCPYGHRCHFRH 323 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MHKSTTSASN TIAAGTTMSS SSQLKSQLQT NNVYASLYNS SIFAPKQSVP VSLPSTLYGD 60 STHTDSISAS KSINNHLYQT CVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI 120 NHELSKHLSL LIHASVQKQY GSSDQTPPFN FVEGFRGLSV AEKGASSSTW EDISDESPTS 180 VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQGGSSQGG KVRVSSRPRT ASPVKVTKVY 240 VQGVKEEEKP LELEVYNQGM FKTELCNKWQ ETGSCPYGDH CQFAHGIEEL RPVIRHPRYK 300 TEVCRMVLAG VVCPYGHRCH FRHALTDQER LMGPLKPTCR TAPKLDR

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MHKSTTSASN TIAAGTTMSS SSQLKSQLQT NNVYASLYNS SIFAPKQSVP VSLPSTLYGD  60
STHTDSISAS KSINNHLYQT CVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI  120
NHELSKHLSL LIHASVQKQY GSSDQTPPFN FVEGFRGLSV AEKGASSSTW EDISDESPTS  180
VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQGGSSQGG KVRVSSRPRT ASPVKVTKVY  240
VQGVKEEEKP LELEVYNQGM FKTELCNKWQ ETGSCPYGDH CQFAHGIEEL RPVIRHPRYK  300
TEVCRMVLAG VVCPYGHRCH FRHALTDQER LMGPLKPTCR TAPKLDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	2e-81	C3H family protein