PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938112.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 615aa MW: 66139.7 Da PI: 6.011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938112.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.7e-16	382	428	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_022938112.1 382 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 428 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MPLSELYRVA RGKNNMVSAD SSLNPENDVY ELVWENGQIL LQGQSSKARK NSCVPFHSPK 60 GTDSVIRDVL GHDDDDDDDD MVPWLNYPLD EHSSEFLLEL SGVTVNDPLS RNSTSKQVDG 120 DAQLNHLHGA RLEGGNVSKV SSMDVSSARA RSCTNQLHSS ASQQSQISLP HLSSSSTARH 180 NSSNIMNFSH FLRPAVLKSN DQNRDVTKGV GFSSMRCVGS VDKNCSAGNT QPYESSFFKT 240 RGSIRNESKS CCENAVVPSI DNSNPSGVKA PETLEVVEQP EVACLGDSAK NDDHPEPCLE 300 AGASKGLSDS EKVVESVIAA SVCSRTSMKR ALDDTTVVRK RKCHDTEDSE WHSDDVEEES 360 NDVNRATPVR GNGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA 420 IEYLKTLQLQ VQIMSMGAGL FMPPMMFPGG LPPMNAPHIY SPMGVGIGMG YGIAMPDMNG 480 GSPGYPMAQM PHVQGTHFPS PSIPAQTVMH GMPGSNFHVL GLPGQGLPLS MPHGPIAPFR 540 GGPFMTNSSV AVAPVESFGL AAACSSKDSS PKMNAPTVRN GGNDPLITSP RQGNEQASSV 600 NGSGTNPTNN NETTL

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MPLSELYRVA RGKNNMVSAD SSLNPENDVY ELVWENGQIL LQGQSSKARK NSCVPFHSPK  60
GTDSVIRDVL GHDDDDDDDD MVPWLNYPLD EHSSEFLLEL SGVTVNDPLS RNSTSKQVDG  120
DAQLNHLHGA RLEGGNVSKV SSMDVSSARA RSCTNQLHSS ASQQSQISLP HLSSSSTARH  180
NSSNIMNFSH FLRPAVLKSN DQNRDVTKGV GFSSMRCVGS VDKNCSAGNT QPYESSFFKT  240
RGSIRNESKS CCENAVVPSI DNSNPSGVKA PETLEVVEQP EVACLGDSAK NDDHPEPCLE  300
AGASKGLSDS EKVVESVIAA SVCSRTSMKR ALDDTTVVRK RKCHDTEDSE WHSDDVEEES  360
NDVNRATPVR GNGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA  420
IEYLKTLQLQ VQIMSMGAGL FMPPMMFPGG LPPMNAPHIY SPMGVGIGMG YGIAMPDMNG  480
GSPGYPMAQM PHVQGTHFPS PSIPAQTVMH GMPGSNFHVL GLPGQGLPLS MPHGPIAPFR  540
GGPFMTNSSV AVAPVESFGL AAACSSKDSS PKMNAPTVRN GGNDPLITSP RQGNEQASSV  600
NGSGTNPTNN NETTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	392	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-50	bHLH family protein