PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937522.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1087aa MW: 120641 Da PI: 6.447

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937522.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.5e-22	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ XP_022937522.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 219 99***************************9545444.38**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_022937522.1 220 SQLLLGIRH 228 667888875 PP
2	Auxin_resp	124.3	8.4e-41	254	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022937522.1 254 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 336 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1087 aa Download sequence
MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN 60 KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ 120 NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF 180 RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV 240 ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM 300 MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPSR VSIWEVEPVV 360 TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ 420 WMSMQHNSQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL CFQAPVMSSS NLQFSKANQQ 480 NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQPKQSQQQQ QTSQSALPNN GVGGANHLSN 540 QSLQQPLVYS QLQQQQQQLL AGNVQSHQTS QPSNKNSIET TSLLQETQFQ PQIDQQPTLV 600 SKHHQQTQFQ QAPLQLLQQS LSQRTQQQPQ VQQFSQPIIP SEQQLQWQLL QKLQQQQQQQ 660 QQQQPLVSPA SPLFPPQMIQ PHPVHQQNQQ LPPLPLSNQP QFNTSGGSFQ TEKHNSNGFS 720 SLGLMQSQQV PITQSHNQFK PTTAIRGYSG LTDGDAPSCS TSPSTNNCQV SVSNLLNKNQ 780 QGAATLGGDL VVEPATNLPQ ELPSKPDLRN KPEFPNSKGL DQLKYKGTVP DQVEASSSGT 840 SYCLDAGTIQ QTFPLPTCLD NDVQSHPQTN IPFSNSIDGW APDTLLSRGY DSQKDLQNLL 900 SNYEGGVPRD IETELSTAAI RSQSFGVPNL PFKPGCSNDV NVNEAGALSS GLWANHSQRM 960 RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPQRTDWK LVYVDHENDI 1020 LLVGDDPWEE FVSCVQSIKI LSSSEVQQMS LNGNLGHIQA PNQACSGTDS GNAWRGQYDD 1080 NSAASFN

Sequence ? help Back to Top

Protein Sequence Length: 1087 aa Download sequence

MKAPPNGFVP NSGEGTGERK NINSELWHAC AGPLVSLPPV GSLVVYFPQG HSEQVAASMN  60
KETDFIPNYP NLPSKLVCML HNVILHADPE TDEVYAQMTL QPVNKYEKEA LLASDIGLKQ  120
NRQPAEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELVA RDLHDNSWTF  180
RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS QLLLGIRHAN RQQPALSSSV  240
ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP LAKYTKAMYT QVSLGMRFRM  300
MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD ESAAGERPSR VSIWEVEPVV  360
TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG DDFGMKDTPS SIFPGLSLVQ  420
WMSMQHNSQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL CFQAPVMSSS NLQFSKANQQ  480
NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQPKQSQQQQ QTSQSALPNN GVGGANHLSN  540
QSLQQPLVYS QLQQQQQQLL AGNVQSHQTS QPSNKNSIET TSLLQETQFQ PQIDQQPTLV  600
SKHHQQTQFQ QAPLQLLQQS LSQRTQQQPQ VQQFSQPIIP SEQQLQWQLL QKLQQQQQQQ  660
QQQQPLVSPA SPLFPPQMIQ PHPVHQQNQQ LPPLPLSNQP QFNTSGGSFQ TEKHNSNGFS  720
SLGLMQSQQV PITQSHNQFK PTTAIRGYSG LTDGDAPSCS TSPSTNNCQV SVSNLLNKNQ  780
QGAATLGGDL VVEPATNLPQ ELPSKPDLRN KPEFPNSKGL DQLKYKGTVP DQVEASSSGT  840
SYCLDAGTIQ QTFPLPTCLD NDVQSHPQTN IPFSNSIDGW APDTLLSRGY DSQKDLQNLL  900
SNYEGGVPRD IETELSTAAI RSQSFGVPNL PFKPGCSNDV NVNEAGALSS GLWANHSQRM  960
RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPQRTDWK LVYVDHENDI  1020
LLVGDDPWEE FVSCVQSIKI LSSSEVQQMS LNGNLGHIQA PNQACSGTDS GNAWRGQYDD  1080
NSAASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein