PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936842.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 480aa MW: 51238.7 Da PI: 8.1754

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936842.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022936842.1 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	15.4	5.5e-05	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + ks+ k H++t+ XP_022936842.1 140 WKCERCSKKYAVKSDWKAHMKTC 162 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MVDMENCSPV AVSGGDASLS SSRYIEPVTA VALPKKKRNL PGMPDPTAEV IALSAESLLA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTDNEV RKRVYVCPEP TCVHHNSARA 120 LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VKSDWKAHMK TCGTREYKCD CGTLFSRRDS 180 FITHRAFCDV LAEESARAQT LALPYSNPKE SDTVSPPPPP LTPTTTVVSP ALSIHSSELA 240 DTQIRVSSIL TPSGAAVNSS SNDLFGNSTV FATSASSPTV AGSNLPTSIV SYDCPSTCPS 300 VSTVNPTSLS LSTPLYLSTK GSSSLFPRPD QDRLQYTCST QPAAMSATAL LQKAAEMGAT 360 ASNPSLFRGI GMATTTSSVH DRSATANVNR DHCNGASLTG GLWLELPSGL AGSGLMMAGG 420 PFCSFGSQPM TRDLLGLGID GGGASTSRFS ALIASMNGGC AYDESSTADA WDRDEQDGKY

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MVDMENCSPV AVSGGDASLS SSRYIEPVTA VALPKKKRNL PGMPDPTAEV IALSAESLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTDNEV RKRVYVCPEP TCVHHNSARA  120
LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VKSDWKAHMK TCGTREYKCD CGTLFSRRDS  180
FITHRAFCDV LAEESARAQT LALPYSNPKE SDTVSPPPPP LTPTTTVVSP ALSIHSSELA  240
DTQIRVSSIL TPSGAAVNSS SNDLFGNSTV FATSASSPTV AGSNLPTSIV SYDCPSTCPS  300
VSTVNPTSLS LSTPLYLSTK GSSSLFPRPD QDRLQYTCST QPAAMSATAL LQKAAEMGAT  360
ASNPSLFRGI GMATTTSSVH DRSATANVNR DHCNGASLTG GLWLELPSGL AGSGLMMAGG  420
PFCSFGSQPM TRDLLGLGID GGGASTSRFS ALIASMNGGC AYDESSTADA WDRDEQDGKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-118	C2H2 family protein