PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936406.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 1003aa MW: 110201 Da PI: 5.1664

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936406.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia ++ Rt+ qc +rwqk+l XP_022936406.1 37 KGQWTPEEDEILRQAVDHFKGKNWKKIAGCFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	57.1	4.2e-18	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+t a +++ gR +kqc++rw+++l XP_022936406.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTFATHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.6	1.8e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_022936406.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MEGDKTISTP SDKPEIRDQR IRALHGRTSG PTRRSTKGQW TPEEDEILRQ AVDHFKGKNW 60 KKIAGCFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTFATHLP 120 GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYVASGLLT QFQDPIPAGQ PNQLPVSSSK VLGSGNDSGL NGMDTEEISV 240 CSQDPSVADS FMSDSACATL HKRKEFHLVE DLELGKEQSI SPVSSSEPYY PPMEAITCPI 300 AEFGQEVGHS LSPSEKNVSD CRTSSNRQHQ CDLNEFPNIS SLQLGIEASQ FEAIGTRMGE 360 SHGASSSAQT SSMIKGAAAS AQAECMFISD DECCRVLFSD AKSDRCDLTS NLKEGSSVSE 420 MCDYKVPVHL FSTPKVENNH ALASQIHNPS SGTDVQEKNS VHQSGMPIPS TVSVNNDMIL 480 LGGTGPNQLF VGTLEHGFVT SQQNAFAYNG GTSKSSYFEV ADNPEMQEQP GGAEELPKPM 540 CINPFATAAD VTGTCSHSDE RAKQNGEHQD SGALCYEPPR FTSLDVPFFS CDLIQSGSEM 600 QEYSPLGIRQ LMMTSLNSVT PFRLWDSPSR DTSPDAVLKS AAKTFTSTPS ILKKRHRDLM 660 SPLSERRIDK KLETNVTSSL TENFSRLDVV FNDVADKRSI EDSAEDKENV YCTFEVREEK 720 TDDGNESRNA TLSENNFPKS SSQDYTKQET ADTEMICVQS AAEIVPPGIL AEHDANDLLL 780 HTVDQKTLSS STGIKKQYSP SRLADDVSKV SSGNSHGLPC SSPPTICGSY PDGPTHELPV 840 TSSSFHEKMD SNRPQITVMG IASLPETGET PFKRSIESPS AWMSPWFFNS FLPGPKIDTE 900 ISIEDIGYFS SPKGRSLDAI GLMKQVGERT AAACANAHEV LGNETPETLL KGTSMKHLRC 960 DETLLAECRV LDFSECGSPG KAETECVKTT AATSPPHLLQ ASR

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MEGDKTISTP SDKPEIRDQR IRALHGRTSG PTRRSTKGQW TPEEDEILRQ AVDHFKGKNW  60
KKIAGCFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTFATHLP  120
GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYVASGLLT QFQDPIPAGQ PNQLPVSSSK VLGSGNDSGL NGMDTEEISV  240
CSQDPSVADS FMSDSACATL HKRKEFHLVE DLELGKEQSI SPVSSSEPYY PPMEAITCPI  300
AEFGQEVGHS LSPSEKNVSD CRTSSNRQHQ CDLNEFPNIS SLQLGIEASQ FEAIGTRMGE  360
SHGASSSAQT SSMIKGAAAS AQAECMFISD DECCRVLFSD AKSDRCDLTS NLKEGSSVSE  420
MCDYKVPVHL FSTPKVENNH ALASQIHNPS SGTDVQEKNS VHQSGMPIPS TVSVNNDMIL  480
LGGTGPNQLF VGTLEHGFVT SQQNAFAYNG GTSKSSYFEV ADNPEMQEQP GGAEELPKPM  540
CINPFATAAD VTGTCSHSDE RAKQNGEHQD SGALCYEPPR FTSLDVPFFS CDLIQSGSEM  600
QEYSPLGIRQ LMMTSLNSVT PFRLWDSPSR DTSPDAVLKS AAKTFTSTPS ILKKRHRDLM  660
SPLSERRIDK KLETNVTSSL TENFSRLDVV FNDVADKRSI EDSAEDKENV YCTFEVREEK  720
TDDGNESRNA TLSENNFPKS SSQDYTKQET ADTEMICVQS AAEIVPPGIL AEHDANDLLL  780
HTVDQKTLSS STGIKKQYSP SRLADDVSKV SSGNSHGLPC SSPPTICGSY PDGPTHELPV  840
TSSSFHEKMD SNRPQITVMG IASLPETGET PFKRSIESPS AWMSPWFFNS FLPGPKIDTE  900
ISIEDIGYFS SPKGRSLDAI GLMKQVGERT AAACANAHEV LGNETPETLL KGTSMKHLRC  960
DETLLAECRV LDFSECGSPG KAETECVKTT AATSPPHLLQ ASR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein