PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022935906.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 315aa MW: 35633.4 Da PI: 4.594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022935906.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.1e-12	150	193	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A+eY+k+L XP_022935906.1 150 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYVKEL 193 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MELNQHYLFE ELFALKREID WEFAMPTDIN AWNFDCSDSM TMDELNLSYL LNAQGQYSFP 60 ADQFTAAAAA ASTGDSMSFE VYNGEYPIMN MEEEELGILE DEIHNLEVQA NCKVEAVQSP 120 EEIVPNAGDL GPKIVNSNRK KLQGQPSKNL MAERRRRKRL NDRLSMLRSI VPKISKMDRT 180 AILADAIEYV KELVEKITNL QREIEAGNDP NKLGILRDLK RNEYLVRNSA KFNVERREGQ 240 TGIEICCAAK PGLLLSTVQT LEALGLDIQH CVVSCFNDFA MQASCSEGEE QRRRMSTEEV 300 KQALFQNAGY GGRCP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	159	RKKLQGQPSKNLMAERRRRKR
2	153	160	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-77	bHLH family protein