PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933824.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 540aa MW: 59398.4 Da PI: 6.8205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933824.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.2	1.1e-18	159	245	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++e+ ++l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+q+e XP_022933824.1 159 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERQRMSDG-GISISHWPWFKQME 245 5***********************************777778899*********************9.677889*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MASCDDDFSL LSDDHHHHNH HQSTTNHHHV PNPQHIHQSY VPHRFTPRSS SVHPPPPPPP 60 SAQAAQPILA PSGSPKKIGG RIDKEEEDDD GEDYGDATFC SSSFDNGDQN RIGVGVDVDV 120 RVEKRKDQSD ELGEEGGSYS YKRAKPSSSG GEYRKDREEW SDAAISCLLD AYTEKFTQLN 180 RGNLRGRDWE EVAATVSERC EKQSKSVEQC KNKVDNLKKR YKLERQRMSD GGISISHWPW 240 FKQMEQIVGN SLTMKVVSDE DRSVGSSATT PRISKRYVIP APNTTGHMNN LKPKSVSSPR 300 WRRVVFKISG TALTGTGPNN IDPKVTMAIA REVVIACRLG VEVAIVVGGR NVFCGDSWVT 360 ATGLDRCTAY QIGMMATVMN SILLQSAIEN MGVQTRVQSA FMLHEVAEPY SRQRAIRHLE 420 KGRVVIFGGI GTGTGNPLFS TDTAAALRAS EIHAEAVLKG TNADGVYDCS SQDNNFTFKH 480 ISFRELASRG ATSMDVTALT FCEENNIPVV VFNLLEPENI SKALCGDQVG TLIDQNGRIS

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MASCDDDFSL LSDDHHHHNH HQSTTNHHHV PNPQHIHQSY VPHRFTPRSS SVHPPPPPPP  60
SAQAAQPILA PSGSPKKIGG RIDKEEEDDD GEDYGDATFC SSSFDNGDQN RIGVGVDVDV  120
RVEKRKDQSD ELGEEGGSYS YKRAKPSSSG GEYRKDREEW SDAAISCLLD AYTEKFTQLN  180
RGNLRGRDWE EVAATVSERC EKQSKSVEQC KNKVDNLKKR YKLERQRMSD GGISISHWPW  240
FKQMEQIVGN SLTMKVVSDE DRSVGSSATT PRISKRYVIP APNTTGHMNN LKPKSVSSPR  300
WRRVVFKISG TALTGTGPNN IDPKVTMAIA REVVIACRLG VEVAIVVGGR NVFCGDSWVT  360
ATGLDRCTAY QIGMMATVMN SILLQSAIEN MGVQTRVQSA FMLHEVAEPY SRQRAIRHLE  420
KGRVVIFGGI GTGTGNPLFS TDTAAALRAS EIHAEAVLKG TNADGVYDCS SQDNNFTFKH  480
ISFRELASRG ATSMDVTALT FCEENNIPVV VFNLLEPENI SKALCGDQVG TLIDQNGRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein