PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022930724.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 501aa MW: 54456.2 Da PI: 6.1985

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022930724.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l+++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_022930724.1 28 KGPWTTAEDGILIEYVQKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	50.3	5.5e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++ XP_022930724.1 81 KGSFSQEEERLIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 124 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MVESNGEKRR SHGDHQEDGG AAEPALKKGP WTTAEDGILI EYVQKHGEGN WNAVQKHTGL 60 ARCGKSCRLR WANHLRPNLK KGSFSQEEER LIIELHAKLG NKWARMAAQL PGRTDNEIKN 120 YWNTRMKRRQ RAGLPLYPLD LQQEATAFQL RQHQNHRSST TTTTNVSVLR QKLEFDNNIQ 180 NSVSVFNFSS TMNNPQKNFS DGSLFYAAPT NQFKFFTENN GGGGFLPLSP VSPFPQIGQV 240 NNNNSLSPLP LPVLPSQAAL QLSYGGYMGN YNSGLNSMFL GAPFNHLIPG LETELPSIQT 300 PPHSTTPASS GTSGGDGIMA GANSGLLDVV LLEAEARSRN GKQTKEESSS GGQLKRTAEQ 360 GSTEEQGANN LNVGSVVGSS GGDAAVPAGE NHSDGFSSTH SSSRKRQRME PLEEMESMVD 420 DDLMSLLSNF QTGMPVPELY PNNSNDDLGI NTHNGLSLCE TNGNRDEDEQ RPNVGTTSAV 480 ASPVLEWSLG SSCWNNMPSI C

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MVESNGEKRR SHGDHQEDGG AAEPALKKGP WTTAEDGILI EYVQKHGEGN WNAVQKHTGL  60
ARCGKSCRLR WANHLRPNLK KGSFSQEEER LIIELHAKLG NKWARMAAQL PGRTDNEIKN  120
YWNTRMKRRQ RAGLPLYPLD LQQEATAFQL RQHQNHRSST TTTTNVSVLR QKLEFDNNIQ  180
NSVSVFNFSS TMNNPQKNFS DGSLFYAAPT NQFKFFTENN GGGGFLPLSP VSPFPQIGQV  240
NNNNSLSPLP LPVLPSQAAL QLSYGGYMGN YNSGLNSMFL GAPFNHLIPG LETELPSIQT  300
PPHSTTPASS GTSGGDGIMA GANSGLLDVV LLEAEARSRN GKQTKEESSS GGQLKRTAEQ  360
GSTEEQGANN LNVGSVVGSS GGDAAVPAGE NHSDGFSSTH SSSRKRQRME PLEEMESMVD  420
DDLMSLLSNF QTGMPVPELY PNNSNDDLGI NTHNGLSLCE TNGNRDEDEQ RPNVGTTSAV  480
ASPVLEWSLG SSCWNNMPSI C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	12	KRRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	8e-72	MYB family protein