PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928085.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 477aa MW: 55192.7 Da PI: 6.7335

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928085.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.4	2.3e-29	31	115	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e++aL+++r++m++++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ ++ ++++yf+qlea XP_022928085.1 31 RWPREETMALLKVRSRMDSAFRDSSIKAPLWEEVSRKLAELGYNRSAKKCKEKFENIYKYHKRTKDGRSGK--QNGKNYRYFEQLEA 115 8******************************************************************96..66678*****85 PP
2	trihelix	97.3	1.4e-30	311	396	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi+++++++ +++++ k+plWee+s +m++ g+ r++k+Ckekwen+nk++kk+ke++kkr +e+s+tc+yf+ql+a XP_022928085.1 311 RWPKDEIDALIQLKTSLQMKYQENGPKGPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCSYFQQLDA 396 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MREISPSPEI STAVVSRASE EEADRNWAGN RWPREETMAL LKVRSRMDSA FRDSSIKAPL 60 WEEVSRKLAE LGYNRSAKKC KEKFENIYKY HKRTKDGRSG KQNGKNYRYF EQLEALDNHP 120 LLPSQADSKE EIPNKIVHNA IPCSIVNPDS NFVETTTTLI SMSTTSCSSK ESGGTMRKKK 180 KKRKFVEFFG RLMKEVIEKQ EKLQKKLVEA LEKCEEERLA REEEWKMQEL ARIKNERERF 240 NHQRSIAAAK DAAVLSFLKA FSEQVGTVQF PESLILMENL TGREDDGNVD RNTSTRENGN 300 DGNSNQISSS RWPKDEIDAL IQLKTSLQMK YQENGPKGPL WEEISLAMKK LGYDRNAKRC 360 KEKWENINKY FKKVKESNKK RPEDSKTCSY FQQLDALYKQ KSKKVVDNHP NHELKPEELL 420 MHMMGSQEES HQPESATDDG KAENADQNQE DEDDNNDEDE YYYIVADNNS NQVEVGS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MREISPSPEI STAVVSRASE EEADRNWAGN RWPREETMAL LKVRSRMDSA FRDSSIKAPL  60
WEEVSRKLAE LGYNRSAKKC KEKFENIYKY HKRTKDGRSG KQNGKNYRYF EQLEALDNHP  120
LLPSQADSKE EIPNKIVHNA IPCSIVNPDS NFVETTTTLI SMSTTSCSSK ESGGTMRKKK  180
KKRKFVEFFG RLMKEVIEKQ EKLQKKLVEA LEKCEEERLA REEEWKMQEL ARIKNERERF  240
NHQRSIAAAK DAAVLSFLKA FSEQVGTVQF PESLILMENL TGREDDGNVD RNTSTRENGN  300
DGNSNQISSS RWPKDEIDAL IQLKTSLQMK YQENGPKGPL WEEISLAMKK LGYDRNAKRC  360
KEKWENINKY FKKVKESNKK RPEDSKTCSY FQQLDALYKQ KSKKVVDNHP NHELKPEELL  420
MHMMGSQEES HQPESATDDG KAENADQNQE DEDDNNDEDE YYYIVADNNS NQVEVGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	183	MRKKKKKR
2	177	183	RKKKKKR
3	178	184	RKKKKKR
4	179	184	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-108	Trihelix family protein