PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022926243.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 636aa MW: 71585.6 Da PI: 5.6174

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022926243.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.9	1.4e-28	71	155	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++ k+plWe+vs+k+ e g++rs+k+Ckek+en+ k++k++ke + + +++s+++++f+qlea XP_022926243.1 71 RWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRCG--KPDSKSYKFFEQLEA 155 8******************************************************************9..588889*****85 PP
2	trihelix	102	4.5e-32	449	534	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a XP_022926243.1 449 RWPKVEVEALIKLRTNLDAKYQENGPKGPLWEEISSAMKRLGYNRNAKRCKEKWENINKYFKKVKESKKTR-PEDSKTCPYFHQLDA 534 8******************************************************************97.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MLGDSTTSVL GGGAGEDSAV PETTNQQDGL MDDVGESGAV TAEDNNKTCG EDERGRSGEG 60 DNGDRSFGGN RWPRQETLAL LKIRSEMDVA FRDASVKGPL WEQVSRKLGE LGYHRSAKKC 120 KEKFENVYKY HKRTKEVRCG KPDSKSYKFF EQLEALENHP PLNFHSHLSK PPPPATAASP 180 PTTVISHIPS TVPSTTTAVP HLMNISFTQP NPTIHLQSMP PPPPLPFNNP TSLATTIAPL 240 FQTNVSSGAA GLGFEADLIS NSSSDDVDSS TSSDEASRQR KKRKWKDFFE RLMREVIERQ 300 EEMQKRFLEA IEKREQERVV REEAWRMQEM AKINREKEIL AQERSMAAAK DAAITSFLQK 360 LTQSHHNNDN PSPPPPPPPP PRQQPISISN PTPVVQPPPQ QASTLQVVHP NSTPQKLVNN 420 NEYLQMEIVK RSDNGGESYR MSPASSSSRW PKVEVEALIK LRTNLDAKYQ ENGPKGPLWE 480 EISSAMKRLG YNRNAKRCKE KWENINKYFK KVKESKKTRP EDSKTCPYFH QLDALYKEKN 540 INNNNGNKFD NVIIGSSTQI MPHQQQPLMV RPEQQWPPQQ ELVRSNSANK DMESEPMDRD 600 EKDEDDDEDD DEEEDEEGGE NYEIVASKPA SMSVAE

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MLGDSTTSVL GGGAGEDSAV PETTNQQDGL MDDVGESGAV TAEDNNKTCG EDERGRSGEG  60
DNGDRSFGGN RWPRQETLAL LKIRSEMDVA FRDASVKGPL WEQVSRKLGE LGYHRSAKKC  120
KEKFENVYKY HKRTKEVRCG KPDSKSYKFF EQLEALENHP PLNFHSHLSK PPPPATAASP  180
PTTVISHIPS TVPSTTTAVP HLMNISFTQP NPTIHLQSMP PPPPLPFNNP TSLATTIAPL  240
FQTNVSSGAA GLGFEADLIS NSSSDDVDSS TSSDEASRQR KKRKWKDFFE RLMREVIERQ  300
EEMQKRFLEA IEKREQERVV REEAWRMQEM AKINREKEIL AQERSMAAAK DAAITSFLQK  360
LTQSHHNNDN PSPPPPPPPP PRQQPISISN PTPVVQPPPQ QASTLQVVHP NSTPQKLVNN  420
NEYLQMEIVK RSDNGGESYR MSPASSSSRW PKVEVEALIK LRTNLDAKYQ ENGPKGPLWE  480
EISSAMKRLG YNRNAKRCKE KWENINKYFK KVKESKKTRP EDSKTCPYFH QLDALYKEKN  540
INNNNGNKFD NVIIGSSTQI MPHQQQPLMV RPEQQWPPQQ ELVRSNSANK DMESEPMDRD  600
EKDEDDDEDD DEEEDEEGGE NYEIVASKPA SMSVAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-62	Trihelix family protein