PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924199.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 415aa MW: 46143.8 Da PI: 8.4444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924199.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022924199.1 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	17.4	1.2e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022924199.1 137 WVCEKCSKAYAVQSDYKAHLKTC 159 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MIANTPASAS LSLPSSEPYS CLENGSSNSN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPVVRKRV FVCPEPSCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDACNMGHL RQESQTLHPA CLSRTASSPS PPSDANFTAP PTAIFLAPTD DSIINNNNNN 240 SHHNLDLKLS TSTSNEGSST QLQLSIGSCD FGDKKKRVQL LDDEKGGGRG PGGVREEARE 300 ELREAMAEKA YAEEARQQAK RQIEMAEEEF VNAKRMRQQA QAELDKATAL KQAAIKQINS 360 TLLEITCQAC QKQFQAKPTT TTTTTAPADH DTSVAFSYVS SVITTEVNKY AERVL

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MIANTPASAS LSLPSSEPYS CLENGSSNSN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPVVRKRV FVCPEPSCLH HDPCHALGDL  120
VGIKKHFRRK HSNHKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDACNMGHL RQESQTLHPA CLSRTASSPS PPSDANFTAP PTAIFLAPTD DSIINNNNNN  240
SHHNLDLKLS TSTSNEGSST QLQLSIGSCD FGDKKKRVQL LDDEKGGGRG PGGVREEARE  300
ELREAMAEKA YAEEARQQAK RQIEMAEEEF VNAKRMRQQA QAELDKATAL KQAAIKQINS  360
TLLEITCQAC QKQFQAKPTT TTTTTAPADH DTSVAFSYVS SVITTEVNKY AERVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-131	C2H2 family protein