PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022922820.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HB-PHD

Protein Properties

Length: 878aa MW: 97636.6 Da PI: 4.6227

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022922820.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.5e-14	704	755	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ le+L + F++n+yp ++++e LA++lgL+ +qV+ WF N R + XP_022922820.1 704 RRLSRLALERLLASFQENQYPERATKESLAQELGLSVKQVSKWFTNTRWSTR 755 56788899****************************************8766 PP
2	PHD	37.2	6.7e-13	338	393	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ e++++lCdg C++ fH+ Cl+++l ++++p + wlC+ C++k XP_022922820.1 338 FCAKCGSkeLSFENDIILCDGiCDRGFHQFCLEPPLLNTDIPPDdeGWLCPGCDCK 393 6999965555****88***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MEERDEYTES RSNNNAEAVQ EAKISVEAEM RTCLSNEQKH SVPDYHELEA TPGYSNKTGG 60 SDEEKPEVQQ NMEEENRELG SGDVLIELSE KHNQTFSNLA DNDQVEAGNL LCCDKDTENL 120 IVPIEVETTT LLVDCSELPP EVVNKNYIEQ MNPPNEKLTQ NTPFQNLETV PSNSEQSDHK 180 DKRILKSIKI NSILRSLVSS DRNLRSKTQE KDKDPEPSND LNNFTAEEGK GKKKERNIQG 240 KGARVDEFSS IRNHLRYLLN RIKYEQNLIE AYSSEGWKGF SSDKLKPEKE LQRASNEIMR 300 RKLKIRDVFQ RIDALCGEGG LSKSLFDSQG QIDSEDIFCA KCGSKELSFE NDIILCDGIC 360 DRGFHQFCLE PPLLNTDIPP DDEGWLCPGC DCKDDCLNLL NEFQGSRLSI TDGWEKVYPE 420 AAASAAGRNF DHASGLPSDD SVDDDDYDPD VPDTIVQDDE SSPETSGYAS ASEELESPPN 480 VDQYLGLPSD DSEDDDYDPS APERDEDVRQ ESSSSDFTSD SEDLAALDSN PSSKADNLVS 540 PSLNNTTSMK NPDGRSSGGG PRKSALYNEL SSLLESGPDK DGPEPVLGRR QVERLDYKKL 600 HDETYGNVPT DSSDDTYASV SMDSSDDQGW DSNTRKRSPK TLVLALPNYR TNDDLTNIKT 660 KHSSKRGTRQ KAVAANMNKS VSKTPEDTGK ASSSVRRTTP SSYRRLSRLA LERLLASFQE 720 NQYPERATKE SLAQELGLSV KQVSKWFTNT RWSTRHPSSV EGNKAKSSSR MGIHSSQASG 780 ELHQPEQEFG AQHQELPTAD SVVAPCQSGD TGDVKLATQE TKRSEFSATK SRKRKGRSDH 840 AASCSKDSKE SQRPPAKSPK VNEIQTAHSI KTRRRNSL

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MEERDEYTES RSNNNAEAVQ EAKISVEAEM RTCLSNEQKH SVPDYHELEA TPGYSNKTGG  60
SDEEKPEVQQ NMEEENRELG SGDVLIELSE KHNQTFSNLA DNDQVEAGNL LCCDKDTENL  120
IVPIEVETTT LLVDCSELPP EVVNKNYIEQ MNPPNEKLTQ NTPFQNLETV PSNSEQSDHK  180
DKRILKSIKI NSILRSLVSS DRNLRSKTQE KDKDPEPSND LNNFTAEEGK GKKKERNIQG  240
KGARVDEFSS IRNHLRYLLN RIKYEQNLIE AYSSEGWKGF SSDKLKPEKE LQRASNEIMR  300
RKLKIRDVFQ RIDALCGEGG LSKSLFDSQG QIDSEDIFCA KCGSKELSFE NDIILCDGIC  360
DRGFHQFCLE PPLLNTDIPP DDEGWLCPGC DCKDDCLNLL NEFQGSRLSI TDGWEKVYPE  420
AAASAAGRNF DHASGLPSDD SVDDDDYDPD VPDTIVQDDE SSPETSGYAS ASEELESPPN  480
VDQYLGLPSD DSEDDDYDPS APERDEDVRQ ESSSSDFTSD SEDLAALDSN PSSKADNLVS  540
PSLNNTTSMK NPDGRSSGGG PRKSALYNEL SSLLESGPDK DGPEPVLGRR QVERLDYKKL  600
HDETYGNVPT DSSDDTYASV SMDSSDDQGW DSNTRKRSPK TLVLALPNYR TNDDLTNIKT  660
KHSSKRGTRQ KAVAANMNKS VSKTPEDTGK ASSSVRRTTP SSYRRLSRLA LERLLASFQE  720
NQYPERATKE SLAQELGLSV KQVSKWFTNT RWSTRHPSSV EGNKAKSSSR MGIHSSQASG  780
ELHQPEQEFG AQHQELPTAD SVVAPCQSGD TGDVKLATQE TKRSEFSATK SRKRKGRSDH  840
AASCSKDSKE SQRPPAKSPK VNEIQTAHSI KTRRRNSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-93	HB-PHD family protein