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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022777354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | LSD | ||||||||
Protein Properties | Length: 141aa MW: 15359.3 Da PI: 5.5139 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.9 | 8.9e-10 | 53 | 77 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG + +C++C tV XP_022777354.1 53 CGSCRQLLSYPRGTLLAKCSCCETV 77 ************************9 PP | |||||||
2 | zf-LSD1 | 45.5 | 1.2e-14 | 91 | 115 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GApsV+C++C++V XP_022777354.1 91 CDSCTVLLMYPYGAPSVKCSSCHFV 115 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence |
MDNTEAEAKQ PKGDQQQGDE EEGPPPGWQS IPPQASAPQQ PLHLSSEMAQ MVCGSCRQLL 60 SYPRGTLLAK CSCCETVNFV LEAHQVGVVK CDSCTVLLMY PYGAPSVKCS SCHFVTEIGE 120 HNRRPPWSVQ QGQPTPPNVV H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 7e-42 | LSD family protein |