PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022775976.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 441aa MW: 48856.8 Da PI: 5.3409

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022775976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.1	1e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_022775976.1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59 578*****************************667888888876 PP
2	CCT	68.6	1.7e-23	388	431	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_022775976.1 388 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 431 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MISTKNVANA VCGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR 60 LKTSSVKSSI TEAPLESFSP SWDKGFTRKA RTRRPAKPSI HQKLLIAELT IKKNNPIPLV 120 PEVGADEISH EENEEEQLLY RVPIFDPLAA ELCTSTTSNE AVVSAEGNDV ETTDAAASES 180 KAFLACKGEN VDGSHGLFPS EMDLAEFAAD VESLLGKGLE NESFAMEQLG LMDSKEKDFR 240 DCSLSNGEVK IEDEECFEAG KECHVDSEID MAREPFELSF NYDSPASCGE GDELVKEVVT 300 VKSNRDGEFE EDTAKKKKRK ILLSLDYEAV ITAWATQGSP WTSGGRPDFD PDECWPDCTG 360 TGGTEVQHSY SDLNIGMGGH QAVRDGGREA RVTRYREKRR TRLFSKKIRY EVRKLNAEKR 420 PRMKGRFVKR ASFLAAGPAF P

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MISTKNVANA VCGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTSSVKSSI TEAPLESFSP SWDKGFTRKA RTRRPAKPSI HQKLLIAELT IKKNNPIPLV  120
PEVGADEISH EENEEEQLLY RVPIFDPLAA ELCTSTTSNE AVVSAEGNDV ETTDAAASES  180
KAFLACKGEN VDGSHGLFPS EMDLAEFAAD VESLLGKGLE NESFAMEQLG LMDSKEKDFR  240
DCSLSNGEVK IEDEECFEAG KECHVDSEID MAREPFELSF NYDSPASCGE GDELVKEVVT  300
VKSNRDGEFE EDTAKKKKRK ILLSLDYEAV ITAWATQGSP WTSGGRPDFD PDECWPDCTG  360
TGGTEVQHSY SDLNIGMGGH QAVRDGGREA RVTRYREKRR TRLFSKKIRY EVRKLNAEKR  420
PRMKGRFVKR ASFLAAGPAF P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	320	KKKKRK
2	399	415	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-87	CO-like family protein