PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022771636.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 414aa MW: 45121 Da PI: 4.9744

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022771636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.6e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_022771636.1 4 NCDFCGDQRPVVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777765 PP
2	zf-B_box	21.6	4.6e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + + lC++C +H g H++++ XP_022771636.1 46 LLCDRCNSQPAFVRCAEERASLCQNCDWMGH-GtstlnltHKRQT 89 57*****************************.5588888888766 PP
3	CCT	64.7	2.6e-22	357	400	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ XP_022771636.1 357 RSNAVMRYKEKKKTRKFEKQVRYASRKARADVRKRVKGRFVKAG 400 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGYNCDFCGD QRPVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCDR CNSQPAFVRC 60 AEERASLCQN CDWMGHGTST LNLTHKRQTI NCYSGCPSAA ELSSIWPFFL QSPSAGESTC 120 EQELGLMSIS ENMGRTSWGP IENTISQNST GVAEVDDDHN ADGGSGWGGS SSIPELRSAR 180 LLDRPAGSTD TSLPKLYCPQ TKYPGLSEDD LYDDFNMDEV DLNLENYEEL FGVTLNHSEE 240 LFENGGIDSL FESKDMPAAD SNCQGAVAAE GSSVGLVNAI HPTCSNAASV DSMMSNKTDS 300 ILYFTARKAH SSLSFSGLTG ESSAGDIQDC GASSMLLVGE PSWCPPCTES SFPSATRSNA 360 VMRYKEKKKT RKFEKQVRYA SRKARADVRK RVKGRFVKAG DAYDYDPLSQ TRSF

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGYNCDFCGD QRPVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCDR CNSQPAFVRC  60
AEERASLCQN CDWMGHGTST LNLTHKRQTI NCYSGCPSAA ELSSIWPFFL QSPSAGESTC  120
EQELGLMSIS ENMGRTSWGP IENTISQNST GVAEVDDDHN ADGGSGWGGS SSIPELRSAR  180
LLDRPAGSTD TSLPKLYCPQ TKYPGLSEDD LYDDFNMDEV DLNLENYEEL FGVTLNHSEE  240
LFENGGIDSL FESKDMPAAD SNCQGAVAAE GSSVGLVNAI HPTCSNAASV DSMMSNKTDS  300
ILYFTARKAH SSLSFSGLTG ESSAGDIQDC GASSMLLVGE PSWCPPCTES SFPSATRSNA  360
VMRYKEKKKT RKFEKQVRYA SRKARADVRK RVKGRFVKAG DAYDYDPLSQ TRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-125	CO-like family protein