PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022770077.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 700aa MW: 76163.3 Da PI: 6.2656

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022770077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.2	1.3e-08	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C +aHg XP_022770077.1 281 PCPEFRK-GACRRGDKCEYAHG 301 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MNRLTVKTEY SFSSLLELSS NNDVEGIKQS IEQDASSIDK VGLWYSREKG SNQIVAKHRT 60 PLMVAAIYGS VDAVKLILTH SAADVNLSCD MDKSTALHCA TSGGSLHAAD VVKLLLSAGA 120 DPNCTDAVGH QPADVVVVHP KLQSIRSVLE ELLSGQVSDD SFGELNLWVS IDNSTSSSPT 180 LSSSPENGSP PCLSNLTSSP MDSKLIDIPV NTIEKKDCLV DPSLPDIKNS IYATDEFRMF 240 SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGAC RRGDKCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTAGELRPL YVSTGSSRSS ASAANVMDMA 360 AAMSLLPGSP LSVSALSSSP FNKPMSPSSN GISHSSAAWP QPNVPTLNLP GSNLQSSRLR 420 CSLNARDIPP EDFDLLPDFD AQQHILNDLT CFSQSCNSSV SISRSVRSKT LTPSNLEELF 480 SAEISSCPRY TDQTVASAVC SPTHKSSLLN QFQQQQNMFS PINTSVFSPK NVEHPLLQAS 540 FGVGSPGRMS PRSTEPISPM AARLSTYVQL EKQQQQLRSL SCRELGSNNP IGSPVNSSWS 600 KWGSPNGQLD WSVSGYEMGQ LRRSSSFELG NNGEEPDLSW VQSLVKESPP EMMQEKLAVP 660 VPGGASSGEV LNNSNSQNNS AEHSVIGAWL EQMQLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MNRLTVKTEY SFSSLLELSS NNDVEGIKQS IEQDASSIDK VGLWYSREKG SNQIVAKHRT  60
PLMVAAIYGS VDAVKLILTH SAADVNLSCD MDKSTALHCA TSGGSLHAAD VVKLLLSAGA  120
DPNCTDAVGH QPADVVVVHP KLQSIRSVLE ELLSGQVSDD SFGELNLWVS IDNSTSSSPT  180
LSSSPENGSP PCLSNLTSSP MDSKLIDIPV NTIEKKDCLV DPSLPDIKNS IYATDEFRMF  240
SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGAC RRGDKCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTAGELRPL YVSTGSSRSS ASAANVMDMA  360
AAMSLLPGSP LSVSALSSSP FNKPMSPSSN GISHSSAAWP QPNVPTLNLP GSNLQSSRLR  420
CSLNARDIPP EDFDLLPDFD AQQHILNDLT CFSQSCNSSV SISRSVRSKT LTPSNLEELF  480
SAEISSCPRY TDQTVASAVC SPTHKSSLLN QFQQQQNMFS PINTSVFSPK NVEHPLLQAS  540
FGVGSPGRMS PRSTEPISPM AARLSTYVQL EKQQQQLRSL SCRELGSNNP IGSPVNSSWS  600
KWGSPNGQLD WSVSGYEMGQ LRRSSSFELG NNGEEPDLSW VQSLVKESPP EMMQEKLAVP  660
VPGGASSGEV LNNSNSQNNS AEHSVIGAWL EQMQLDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein