PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022758061.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 393aa MW: 42984.7 Da PI: 9.1872

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022758061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.4	3.6e-11	51	75	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG+rC+++H++ XP_022758061.1 51 LPDCVYYMRTGFCGYGNRCRYNHPR 75 589********************96 PP
2	zf-CCCH	39.2	1.2e-12	95	120	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tGtCk+G++CkF+H++ XP_022758061.1 95 GEPACQFYLKTGTCKFGASCKFHHPK 120 5789********************96 PP
3	zf-CCCH	33.9	5.3e-11	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tG Ck+G +CkF+H++ XP_022758061.1 141 GEKECLYYLKTGRCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	34.5	3.6e-11	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG Ck+G +C+++H++ XP_022758061.1 297 PGEPECEYYLRTGNCKFGLSCRYHHPR 323 5799*********************96 PP
5	zf-CCCH	32.6	1.4e-10	347	368	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f++++G+Ck+G++CkF H+ XP_022758061.1 347 ACSFYLQNGHCKFGSTCKFDHP 368 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEFYGRNPAW NGSQSSYQPE WRPVGPETGL EESMWQLSLK GTELYPERPG LPDCVYYMRT 60 GFCGYGNRCR YNHPRNRAAV EAAVRATGKY PERRGEPACQ FYLKTGTCKF GASCKFHHPK 120 HGGGSFSHVP LNIYAYPLRP GEKECLYYLK TGRCKFGITC KFHHPQPAGT SMPAPAPQFY 180 QPVQSPSVPV PEQYGGASTS VRVARAPLLP GSYVQGAYGP VLFPPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP 300 ECEYYLRTGN CKFGLSCRYH HPRDRVVPLT NCVLSPLGLP LRPGVHACSF YLQNGHCKFG 360 STCKFDHPLS SQSSVPLSSS RSTRQVGEVR RLN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEFYGRNPAW NGSQSSYQPE WRPVGPETGL EESMWQLSLK GTELYPERPG LPDCVYYMRT  60
GFCGYGNRCR YNHPRNRAAV EAAVRATGKY PERRGEPACQ FYLKTGTCKF GASCKFHHPK  120
HGGGSFSHVP LNIYAYPLRP GEKECLYYLK TGRCKFGITC KFHHPQPAGT SMPAPAPQFY  180
QPVQSPSVPV PEQYGGASTS VRVARAPLLP GSYVQGAYGP VLFPPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP  300
ECEYYLRTGN CKFGLSCRYH HPRDRVVPLT NCVLSPLGLP LRPGVHACSF YLQNGHCKFG  360
STCKFDHPLS SQSSVPLSSS RSTRQVGEVR RLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein