PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022755897.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 708aa MW: 76922 Da PI: 5.7015

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022755897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg XP_022755897.1 279 PCPEFRK-GTCRQGDNCEYAHG 299 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MCSGPKKKPT QTGFMMEGES HKEDGLPQKF SVLLELSASN DLIGFKSAIE EEGYDIDEPS 60 MWYGRRMGSK KMGFEERTPL LIASMFGSKD VVNYIIESGR VDVNRACGSD GATAVHCAAG 120 GGSFDSAEVV KILLDASADT NSVDANGNRP GDLIASACNS VFSLRKKMLE SFLKGSGSVG 180 EIEGLPAQVG NEMEGQEQQE NSMPQILKDG TDKKEYPVDL TLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDNCEYAHGI 300 FECWLHPAQY RTRLCKDETN CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSASGSSLD 360 LGSMSPLALG SPSVMIPPTS TPPLTPTGAS STMGGAMWPN QSNIISPTLQ LPGSRLKTAL 420 SAWDIDFDME LLGLESHRRR QQQQLFDEIS GLSSPTSWNN SLSTASAFST SSDRTGELNR 480 FGGVKPTNLE DIFGSIDPTI LLQLQGASHD AAAPQLQSPT GVQMRQNINQ KLRTSYPANL 540 ASSPVRASAS FGIDPSGPTA AAVLSSRSAA FAKRSQSFIE RTAVNRHSGF SSPASLASAM 600 PSNRSDWGSP DGKLDWGIQG EELTKLRKSV SFGYRSSGSN VGNPAPSMTR SSDEPDVSWV 660 QSLVKDTPAG QLSSEDEQQQ QCHLNSRGAE MLAAWVEQLY MEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MCSGPKKKPT QTGFMMEGES HKEDGLPQKF SVLLELSASN DLIGFKSAIE EEGYDIDEPS  60
MWYGRRMGSK KMGFEERTPL LIASMFGSKD VVNYIIESGR VDVNRACGSD GATAVHCAAG  120
GGSFDSAEVV KILLDASADT NSVDANGNRP GDLIASACNS VFSLRKKMLE SFLKGSGSVG  180
EIEGLPAQVG NEMEGQEQQE NSMPQILKDG TDKKEYPVDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDNCEYAHGI  300
FECWLHPAQY RTRLCKDETN CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSASGSSLD  360
LGSMSPLALG SPSVMIPPTS TPPLTPTGAS STMGGAMWPN QSNIISPTLQ LPGSRLKTAL  420
SAWDIDFDME LLGLESHRRR QQQQLFDEIS GLSSPTSWNN SLSTASAFST SSDRTGELNR  480
FGGVKPTNLE DIFGSIDPTI LLQLQGASHD AAAPQLQSPT GVQMRQNINQ KLRTSYPANL  540
ASSPVRASAS FGIDPSGPTA AAVLSSRSAA FAKRSQSFIE RTAVNRHSGF SSPASLASAM  600
PSNRSDWGSP DGKLDWGIQG EELTKLRKSV SFGYRSSGSN VGNPAPSMTR SSDEPDVSWV  660
QSLVKDTPAG QLSSEDEQQQ QCHLNSRGAE MLAAWVEQLY MEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein